Release v.1.1.0 by nschan · Pull Request #156 · nf-core/genomeassembler

nschan · 2025-05-08T12:28:47Z

This PR is for a new release, v.1.1.0, including the template update -> 3.3.2

Major PRs included

The following PRs constitute the majority of changes in this PR, some small PRs, mostly those that fixed issues related to other PRs, are not listed:

#131 - Refactored QC steps into subworkflow.

#133 - Updated the input validation to be more strict. This should prevent some down the line errors in the pipeline

#136 - Switched to using ragtag patch instead of scaffold for flye_on_hifiasm

#138 - Switched to RagTag nf-core module

#142 - Switch --collect to accept a glob pattern instead of a folder, consistent with input validation.

#144 - Added hifiasm_on_hifiasm assembly strategy

#145 - Fixed --skip_assembly input validation bug.

#148 - Switched to LINKS nf-core module

#153 - Switched to nf-core template 3.2.1

#154 - Module maintenance:

updated hifiasm, minimap2, links nf-core modules
updated container in local quast module
separated modules.config into several files for easier navigation and maintenance

#157 - Make clear in output.mdthat paths should be absolute

#158 - Update reporting to not have my name in all generated reports, added tables for QUAST and BUSCO metrics in addition to plots, updated containers & env to include gt, used for table display.

#165 - Added extra checks if reference files exist.

#164 - Update to template 3.3.1

#170 - Update to template 3.3.2

version bump 1.1.0dev

Json schema improvements

refactor qc into subworkflow

Replace local ragtag with the nf-core module Use ragtag patch to create consensus assemblies

* update ragtag module * update changelog

* check if assembly is skipped in initialization, closes #143 * update changelog

* make fix reads accept files, closes #141 * update changelog --------- Co-authored-by: Louis Le Nézet <58640615+LouisLeNezet@users.noreply.github.com>

* add hifiasm_ont_hifiasm_on_hifiasm profile, code, test, docs

* switch to LINKS nf-core module * update changelog * update LINKS args

This fixes an oversight where the mapping to reference was skipped with hifiasm_on_hifiasm, because the reads were not specified for this strategy.

* modules update * subworkflow update after module update

* Template update for nf-core/tools version 3.2.1 * update changelog * fix merge problem * fix nf_core_version * fix linting * fix linting * fix linting * fix ci * clean CI * more memory for HIFIASM_ONT test * more memory for HIFIASM tests * change test limits * move CI disk space cleanup * fix CI test names --------- Co-authored-by: Niklas Schandry <niklas@bio.lmu.de>

* newer quast * fix busco inputs * modules update * update changelog * avoid capturing python locale warning in quast version * correct minimap2_align inputs * separate configs for easier maintainance, change minimap2 preset to lr:hq for ONT reads * update changelog

* version bump * add codename

github-actions · 2025-05-08T12:34:40Z

`nf-core pipelines lint` overall result: Passed ✅ ⚠️

Posted for pipeline commit 77843ad

+| ✅ 204 tests passed       |+
#| ❔   6 tests were ignored |#
!| ❗   4 tests had warnings |!

Details

❗ Test warnings:

pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!

❔ Tests ignored:

files_exist - File is ignored: conf/igenomes.config
files_exist - File is ignored: conf/igenomes_ignored.config
files_exist - File is ignored: assets/sendmail_template.txt
files_exist - File is ignored: assets/multiqc_config.yml
files_unchanged - File ignored due to lint config: .github/CONTRIBUTING.md
multiqc_config - multiqc_config

✅ Tests passed:

files_exist - File found: .gitattributes
files_exist - File found: .gitignore
files_exist - File found: .nf-core.yml
files_exist - File found: .prettierignore
files_exist - File found: .prettierrc.yml
files_exist - File found: CHANGELOG.md
files_exist - File found: CITATIONS.md
files_exist - File found: CODE_OF_CONDUCT.md
files_exist - File found: LICENSE or LICENSE.md or LICENCE or LICENCE.md
files_exist - File found: nextflow_schema.json
files_exist - File found: nextflow.config
files_exist - File found: README.md
files_exist - File found: .github/.dockstore.yml
files_exist - File found: .github/CONTRIBUTING.md
files_exist - File found: .github/ISSUE_TEMPLATE/bug_report.yml
files_exist - File found: .github/ISSUE_TEMPLATE/config.yml
files_exist - File found: .github/ISSUE_TEMPLATE/feature_request.yml
files_exist - File found: .github/PULL_REQUEST_TEMPLATE.md
files_exist - File found: .github/workflows/branch.yml
files_exist - File found: .github/workflows/nf-test.yml
files_exist - File found: .github/actions/get-shards/action.yml
files_exist - File found: .github/actions/nf-test/action.yml
files_exist - File found: .github/workflows/linting_comment.yml
files_exist - File found: .github/workflows/linting.yml
files_exist - File found: assets/email_template.html
files_exist - File found: assets/email_template.txt
files_exist - File found: assets/nf-core-genomeassembler_logo_light.png
files_exist - File found: conf/modules.config
files_exist - File found: conf/test.config
files_exist - File found: conf/test_full.config
files_exist - File found: docs/images/nf-core-genomeassembler_logo_light.png
files_exist - File found: docs/images/nf-core-genomeassembler_logo_dark.png
files_exist - File found: docs/output.md
files_exist - File found: docs/README.md
files_exist - File found: docs/README.md
files_exist - File found: docs/usage.md
files_exist - File found: nf-test.config
files_exist - File found: tests/default.nf.test
files_exist - File found: main.nf
files_exist - File found: conf/base.config
files_exist - File found: .github/workflows/awstest.yml
files_exist - File found: .github/workflows/awsfulltest.yml
files_exist - File found: modules.json
files_exist - File found: ro-crate-metadata.json
files_exist - File not found check: .github/ISSUE_TEMPLATE/bug_report.md
files_exist - File not found check: .github/ISSUE_TEMPLATE/feature_request.md
files_exist - File not found check: .github/workflows/push_dockerhub.yml
files_exist - File not found check: .markdownlint.yml
files_exist - File not found check: .nf-core.yaml
files_exist - File not found check: .yamllint.yml
files_exist - File not found check: bin/markdown_to_html.r
files_exist - File not found check: conf/aws.config
files_exist - File not found check: docs/images/nf-core-genomeassembler_logo.png
files_exist - File not found check: lib/Checks.groovy
files_exist - File not found check: lib/Completion.groovy
files_exist - File not found check: lib/NfcoreTemplate.groovy
files_exist - File not found check: lib/Utils.groovy
files_exist - File not found check: lib/Workflow.groovy
files_exist - File not found check: lib/WorkflowMain.groovy
files_exist - File not found check: lib/WorkflowGenomeassembler.groovy
files_exist - File not found check: parameters.settings.json
files_exist - File not found check: pipeline_template.yml
files_exist - File not found check: Singularity
files_exist - File not found check: lib/nfcore_external_java_deps.jar
files_exist - File not found check: .travis.yml
nextflow_config - Found nf-schema plugin
nextflow_config - Config variable found: manifest.name
nextflow_config - Config variable found: manifest.nextflowVersion
nextflow_config - Config variable found: manifest.description
nextflow_config - Config variable found: manifest.version
nextflow_config - Config variable found: manifest.homePage
nextflow_config - Config variable found: timeline.enabled
nextflow_config - Config variable found: trace.enabled
nextflow_config - Config variable found: report.enabled
nextflow_config - Config variable found: dag.enabled
nextflow_config - Config variable found: process.cpus
nextflow_config - Config variable found: process.memory
nextflow_config - Config variable found: process.time
nextflow_config - Config variable found: params.outdir
nextflow_config - Config variable found: params.input
nextflow_config - Config variable found: validation.help.enabled
nextflow_config - Config variable found: manifest.mainScript
nextflow_config - Config variable found: timeline.file
nextflow_config - Config variable found: trace.file
nextflow_config - Config variable found: report.file
nextflow_config - Config variable found: dag.file
nextflow_config - Config variable found: validation.help.beforeText
nextflow_config - Config variable found: validation.help.afterText
nextflow_config - Config variable found: validation.help.command
nextflow_config - Config variable found: validation.summary.beforeText
nextflow_config - Config variable found: validation.summary.afterText
nextflow_config - Config variable (correctly) not found: params.nf_required_version
nextflow_config - Config variable (correctly) not found: params.container
nextflow_config - Config variable (correctly) not found: params.singleEnd
nextflow_config - Config variable (correctly) not found: params.igenomesIgnore
nextflow_config - Config variable (correctly) not found: params.name
nextflow_config - Config variable (correctly) not found: params.enable_conda
nextflow_config - Config variable (correctly) not found: params.max_cpus
nextflow_config - Config variable (correctly) not found: params.max_memory
nextflow_config - Config variable (correctly) not found: params.max_time
nextflow_config - Config variable (correctly) not found: params.validationFailUnrecognisedParams
nextflow_config - Config variable (correctly) not found: params.validationLenientMode
nextflow_config - Config variable (correctly) not found: params.validationSchemaIgnoreParams
nextflow_config - Config variable (correctly) not found: params.validationShowHiddenParams
nextflow_config - Config timeline.enabled had correct value: true
nextflow_config - Config report.enabled had correct value: true
nextflow_config - Config trace.enabled had correct value: true
nextflow_config - Config dag.enabled had correct value: true
nextflow_config - Config manifest.name began with nf-core/
nextflow_config - Config variable manifest.homePage began with https://github.com/nf-core/
nextflow_config - Config dag.file ended with .html
nextflow_config - Config variable manifest.nextflowVersion started with >= or !>=
nextflow_config - Config manifest.version does not contain dev for release: 1.1.0
nextflow_config - Config params.custom_config_version is set to master
nextflow_config - Config params.custom_config_base is set to https://raw.githubusercontent.com/nf-core/configs/master
nextflow_config - Lines for loading custom profiles found
nextflow_config - nextflow.config contains configuration profile test
nextflow_config - Config default value correct: params.custom_config_version= master
nextflow_config - Config default value correct: params.custom_config_base= https://raw.githubusercontent.com/nf-core/configs/master
nextflow_config - Config default value correct: params.publish_dir_mode= copy
nextflow_config - Config default value correct: params.validate_params= true
nextflow_config - Config default value correct: params.pipelines_testdata_base_path= https://raw.githubusercontent.com/nf-core/test-datasets/
nextflow_config - Config default value correct: params.use_ref= true
nextflow_config - Config default value correct: params.jellyfish= true
nextflow_config - Config default value correct: params.kmer_length= 21
nextflow_config - Config default value correct: params.assembler= flye
nextflow_config - Config default value correct: params.flye_mode= --nano-hq
nextflow_config - Config default value correct: params.trim_short_reads= true
nextflow_config - Config default value correct: params.meryl_k= 21
nextflow_config - Config default value correct: params.merqury= true
nextflow_config - Config default value correct: params.qc_reads= ONT
nextflow_config - Config default value correct: params.busco= true
nextflow_config - Config default value correct: params.busco_lineage= brassicales_odb10
nextflow_config - Config default value correct: params.quast= true
nextflow_config - Config default value correct: params.lift_annotations= true
nf_test_content - 'tests/default.nf.test' contains outdir parameter
nf_test_content - 'tests/default.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/default.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/nextflow.config' contains modules_testdata_base_path
nf_test_content - 'tests/nextflow.config' contains pipelines_testdata_base_path
nf_test_content - 'nf-test.config' sets a testsDir
nf_test_content - 'nf-test.config' sets a workDir
nf_test_content - 'nf-test.config' sets a configFile
files_unchanged - .gitattributes matches the template
files_unchanged - .prettierrc.yml matches the template
files_unchanged - CODE_OF_CONDUCT.md matches the template
files_unchanged - LICENSE matches the template
files_unchanged - .github/.dockstore.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/bug_report.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/config.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/feature_request.yml matches the template
files_unchanged - .github/PULL_REQUEST_TEMPLATE.md matches the template
files_unchanged - .github/workflows/branch.yml matches the template
files_unchanged - .github/workflows/linting_comment.yml matches the template
files_unchanged - .github/workflows/linting.yml matches the template
files_unchanged - assets/email_template.html matches the template
files_unchanged - assets/email_template.txt matches the template
files_unchanged - assets/sendmail_template.txt matches the template
files_unchanged - assets/nf-core-genomeassembler_logo_light.png matches the template
files_unchanged - docs/images/nf-core-genomeassembler_logo_light.png matches the template
files_unchanged - docs/images/nf-core-genomeassembler_logo_dark.png matches the template
files_unchanged - docs/README.md matches the template
files_unchanged - .gitignore matches the template
files_unchanged - .prettierignore matches the template
actions_nf_test - '.github/workflows/nf-test.yml' is triggered on expected events
actions_nf_test - '.github/workflows/nf-test.yml' checks minimum NF version
actions_awstest - '.github/workflows/awstest.yml' is triggered correctly
actions_awsfulltest - .github/workflows/awsfulltest.yml is triggered correctly
actions_awsfulltest - .github/workflows/awsfulltest.yml does not use -profile test
readme - README Nextflow minimum version badge matched config. Badge: 24.10.5, Config: 24.10.5
readme - README nf-core template version badge found.
readme - README Zenodo placeholder was replaced with DOI.
pipeline_if_empty_null - No ifEmpty(null) strings found
plugin_includes - No wrong validation plugin imports have been found
pipeline_name_conventions - Name adheres to nf-core convention
template_strings - Did not find any Jinja template strings (0 files)
schema_lint - Schema lint passed
schema_lint - Schema title + description lint passed
schema_lint - Input mimetype lint passed: 'text/csv'
schema_params - Schema matched params returned from nextflow config
system_exit - No System.exit calls found
actions_schema_validation - Workflow validation passed: fix_linting.yml
actions_schema_validation - Workflow validation passed: ci.yml
actions_schema_validation - Workflow validation passed: clean-up.yml
actions_schema_validation - Workflow validation passed: release-announcements.yml
actions_schema_validation - Workflow validation passed: template-version-comment.yml
actions_schema_validation - Workflow validation passed: awstest.yml
actions_schema_validation - Workflow validation passed: linting.yml
actions_schema_validation - Workflow validation passed: linting_comment.yml
actions_schema_validation - Workflow validation passed: download_pipeline.yml
actions_schema_validation - Workflow validation passed: awsfulltest.yml
actions_schema_validation - Workflow validation passed: nf-test.yml
actions_schema_validation - Workflow validation passed: branch.yml
merge_markers - No merge markers found in pipeline files
modules_json - Only installed modules found in modules.json
modules_structure - modules directory structure is correct 'modules/nf-core/TOOL/SUBTOOL'
local_component_structure - local subworkflows directory structure is correct 'subworkflows/local/TOOL/SUBTOOL'
base_config - conf/base.config found and not ignored.
modules_config - conf/modules.config found and not ignored.
nfcore_yml - Repository type in .nf-core.yml is valid: pipeline
nfcore_yml - nf-core version in .nf-core.yml is set to the latest version: 3.3.2
rocrate_readme_sync - RO-Crate descriptions are in sync with README.md.
version_consistency - Version tags are consistent: manifest.version = 1.1.0, nfcore_yml.version = 1.1.0
included_configs - Pipeline config includes custom configs.

Run details

nf-core/tools version 3.3.2
Run at 2025-07-21 08:44:37

* update usage

* include tabular quast * update report env * add tables for busco * update changelog

* correct singularity https link

* add prefix to singularity container for report * add files exist check for references, closes #165

nf-core-bot · 2025-06-26T12:03:08Z

Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.2.1.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

* Template update for nf-core/tools version 3.2.1 * Template update for nf-core/tools version 3.3.1 * merge template 3.3.1 - fix linting * update pre-commit * merge template 3.3.1 - fix linting * pre-commit config? * pre-commit config? * reinstall links * try larger runner * smaller run, disable bloom filter for hifiasm test * updated test snapshot * updated test snapshot * update nftignore * update nftignore * update nftignore * update nftignore * update nftignore * update nftignore * update nftignore * update nftignore * update nftignore * Update .github/actions/nf-test/action.yml Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com> * Update docs/output.md Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com> * remove .nf-test.log --------- Co-authored-by: Niklas Schandry <niklas@bio.lmu.de> Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>

* update awk regex * update snapshot

* add prefix to singularity container for report * include gawk in gfa2fa env * include gawk in gfa2fa env

* add prefix to singularity container for report * include gawk in gfa2fa env * include gawk in gfa2fa env * mawk version * mawk version in stub * update CHANGELOG * Update CHANGELOG.md Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com> * [automated] Fix code linting --------- Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com> Co-authored-by: nf-core-bot <core@nf-co.re>

* Template update for nf-core/tools version 3.2.1 * Template update for nf-core/tools version 3.3.1 * Template update for nf-core/tools version 3.3.2 * fix nf-core.yml * Update nextflow.config Co-authored-by: Maxime U Garcia <maxime.garcia@seqera.io> * restore nf-test.config * restore ci * remove duplicated line * add nftignore * add tests/nextflow.config * exlcude svg from pre-commit * bump CI NXF_VER * bump CI NXF_VER * end of file * fix linting * pull request template * pull request template --------- Co-authored-by: Niklas Schandry <niklas@bio.lmu.de> Co-authored-by: Maxime U Garcia <maxime.garcia@seqera.io>

CHANGELOG.md

conf/old.modules.config

conf/test.config

nextflow.config

* add prefix to singularity container for report * maxime comments

maxulysse

LGTM

erikrikarddaniel

Just two discretionary suggestions.

modules/local/collect_reads/main.nf

nschan · 2025-07-21T08:36:54Z

Thanks a lot @maxulysse and @erikrikarddaniel for your reviews!

* add prefix to singularity container for report * maxime comments * comments Daniel Lundin * update release date * Revert "comments Daniel Lundin" This reverts commit 376973f. * Daniel Lundin comments

nschan and others added 26 commits March 19, 2025 09:26

version bump to 1.1.0dev

1ee6ce3

Merge pull request #130 from nschan/1.1.0dev

87666ae

version bump 1.1.0dev

refactor qc into subworkflow

cf8d283

update parameter schema

f78a29e

update samplesheet schema

4022396

bump changelog

c80f18b

add PR number

4f0baf6

update changelog, use harshil alignment in emit blocks

a72138a

Merge branch 'dev' into refactor_qc

1bdedb5

Merge pull request #133 from nvnieuwk/json-schema-improvements

053cd94

Json schema improvements

Merge branch 'dev' into refactor_qc

b6efa1d

Merge pull request #131 from nschan/refactor_qc

9f15369

refactor qc into subworkflow

Ragtag patch for consensus assemblies (#136)

5c22ffe

Replace local ragtag with the nf-core module Use ragtag patch to create consensus assemblies

fix medaka singularity container url, closes #139 (#140)

3b82c96

update ragtag module (#138)

7cc2b53

* update ragtag module * update changelog

remove duplicated lines from fastqc module (#147)

feaeef7

check if assembly is skipped in initialization, closes #143 (#145)

55c845d

* check if assembly is skipped in initialization, closes #143 * update changelog

make collect reads accept files, closes #141 (#142)

4b67847

* make fix reads accept files, closes #141 * update changelog --------- Co-authored-by: Louis Le Nézet <58640615+LouisLeNezet@users.noreply.github.com>

add hifiasm_ont_hifiasm_on_hifiasm profile, code, test, docs (#146)

af4e02f

* add hifiasm_ont_hifiasm_on_hifiasm profile, code, test, docs

switch to LINKS nf-core module (#148)

e5043a0

* switch to LINKS nf-core module * update changelog * update LINKS args

enable mapping to ref for hifiasm_on_hifiasm (#149)

5cf8605

This fixes an oversight where the mapping to reference was skipped with hifiasm_on_hifiasm, because the reads were not specified for this strategy.

nf-core/modules update (#151)

71a1c85

* modules update * subworkflow update after module update

fix GFA_2_FA* outputs (#150)

463fa0a

pre-release version bump (#155)

45daf63

* version bump * add codename

nschan added 3 commits May 14, 2025 15:13

Docs update (#157)

0a3b4b7

* update usage

Report update (#158)

81eba87

* include tabular quast * update report env * add tables for busco * update changelog

update report containers (#161)

2ff59f6

nschan added 3 commits May 22, 2025 16:28

add prefix to singularity container for report (#162)

841bdff

Report: singularity image link (#163)

342e0f6

* correct singularity https link

Improve reference input check (#166)

c396932

* add prefix to singularity container for report * add files exist check for references, closes #165

nf-core-bot and others added 5 commits July 1, 2025 09:36

Awk regex (#167)

7d0d953

* update awk regex * update snapshot

add mawk to gfa2fa env (#168)

6ae152a

* add prefix to singularity container for report * include gawk in gfa2fa env * include gawk in gfa2fa env

maxulysse reviewed Jul 11, 2025

View reviewed changes

CHANGELOG.md Outdated Show resolved Hide resolved

maxulysse reviewed Jul 11, 2025

View reviewed changes

conf/old.modules.config Outdated Show resolved Hide resolved

maxulysse reviewed Jul 11, 2025

View reviewed changes

conf/test.config Outdated Show resolved Hide resolved

maxulysse reviewed Jul 11, 2025

View reviewed changes

nextflow.config Outdated Show resolved Hide resolved

Update dev with review comments (#172)

3894395

* add prefix to singularity container for report * maxime comments

maxulysse approved these changes Jul 11, 2025

View reviewed changes

erikrikarddaniel approved these changes Jul 21, 2025

View reviewed changes

modules/local/collect_reads/main.nf Outdated Show resolved Hide resolved

modules/local/collect_reads/main.nf Outdated Show resolved Hide resolved

Comments lundin (#174)

77843ad

* add prefix to singularity container for report * maxime comments * comments Daniel Lundin * update release date * Revert "comments Daniel Lundin" This reverts commit 376973f. * Daniel Lundin comments

nschan merged commit ccf1b89 into master Jul 21, 2025
73 of 74 checks passed

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Release v.1.1.0#156

Release v.1.1.0#156
nschan merged 39 commits intomasterfrom
dev

nschan commented May 8, 2025 •

edited

Loading

Uh oh!

github-actions bot commented May 8, 2025 •

edited

Loading

❗ Test warnings:

❔ Tests ignored:

✅ Tests passed:

Run details

Uh oh!

nf-core-bot commented Jun 26, 2025

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

maxulysse left a comment

Uh oh!

erikrikarddaniel left a comment

Uh oh!

Uh oh!

Uh oh!

nschan commented Jul 21, 2025

Uh oh!

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

5 participants

Conversation

nschan commented May 8, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Major PRs included

Uh oh!

github-actions bot commented May 8, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

nf-core pipelines lint overall result: Passed ✅ ⚠️

❗ Test warnings:

❔ Tests ignored:

✅ Tests passed:

Run details

Uh oh!

nf-core-bot commented Jun 26, 2025

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

maxulysse left a comment

Choose a reason for hiding this comment

Uh oh!

erikrikarddaniel left a comment

Choose a reason for hiding this comment

Uh oh!

Uh oh!

Uh oh!

nschan commented Jul 21, 2025

Uh oh!

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

5 participants

nschan commented May 8, 2025 •

edited

Loading

github-actions bot commented May 8, 2025 •

edited

Loading

`nf-core pipelines lint` overall result: Passed ✅ ⚠️