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Release v.1.1.0 #569

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Release v.1.1.0

Release v.1.1.0 #569

Triggered via pull request July 21, 2025 08:43
@nschannschan
synchronize #156
dev
Status Success
Total duration 12m 11s
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ci.yml

on: pull_request
Matrix: test
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70 warnings
Run pipeline with test data (24.10.5 | hifiont_hifiasm_on_hifiasm | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (24.10.5 | hifiont_hifiasm_on_hifiasm | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.10.5 | hifiont_hifiasm_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifiont_hifiasm_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifiont_hifiasm_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | ont_hifiasm | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (24.10.5 | ont_hifiasm | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.10.5 | ont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | ont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | ont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifiont_hifiasm | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (24.10.5 | hifiont_hifiasm | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.10.5 | hifiont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifiont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifiont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | ont_flye | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (latest-everything | ont_flye | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | ont_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | ont_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | ont_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | ont_flye | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (24.10.5 | ont_flye | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.10.5 | ont_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | ont_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | ont_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifiont_flye_on_hifiasm | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (latest-everything | hifiont_flye_on_hifiasm | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | hifiont_flye_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifiont_flye_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifiont_flye_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifiont_flye_on_hifiasm | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (24.10.5 | hifiont_flye_on_hifiasm | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.10.5 | hifiont_flye_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifiont_flye_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifiont_flye_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifi_flye | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (latest-everything | hifi_flye | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | hifi_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifi_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifi_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifi_hifiasm | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (24.10.5 | hifi_hifiasm | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.10.5 | hifi_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifi_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifi_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifiont_hifiasm | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (latest-everything | hifiont_hifiasm | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | hifiont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifiont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifiont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifi_flye | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (24.10.5 | hifi_flye | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.10.5 | hifi_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifi_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (24.10.5 | hifi_flye | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | ont_hifiasm | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (latest-everything | ont_hifiasm | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | ont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | ont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | ont_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifi_hifiasm | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (latest-everything | hifi_hifiasm | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | hifi_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifi_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifi_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifiont_hifiasm_on_hifiasm | conda)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
Run pipeline with test data (latest-everything | hifiont_hifiasm_on_hifiasm | conda)
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | hifiont_hifiasm_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifiont_hifiasm_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
Run pipeline with test data (latest-everything | hifiont_hifiasm_on_hifiasm | conda)
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.