Infra/ontoportal testkit integration

.github/workflows/testkit-unit-tests.yml

@@ -0,0 +1,87 @@
+name: Docker Unit Tests
+
+on:
+  push:
+    branches:
+      - '**'
+    tags-ignore:
+      - '**'
+  pull_request:
+
+env:
+  # CI execution mode for backend tests:
+  # - container: run `test:docker:<backend>:container` (default)
+  # - native: run `test:docker:<backend>` on host Ruby
+  OPTK_CI_RUN_MODE: ${{ vars.OPTK_CI_RUN_MODE || 'container' }}
+  # Example override to force native mode in this workflow file:
+  # OPTK_CI_RUN_MODE: native
+
+jobs:
+  prepare:
+    runs-on: ubuntu-latest
+    outputs:
+      backends: ${{ steps.cfg.outputs.backends }}
+    steps:
+      - uses: actions/checkout@v4
+
+      - id: cfg
+        name: Read backend matrix from .ontoportal-testkit.yml
+        run: |
+          BACKENDS=$(ruby -ryaml -rjson -e 'c=YAML.safe_load_file(".ontoportal-testkit.yml") || {}; b=c["backends"] || %w[fs ag vo gd]; puts JSON.generate(b)')
+          echo "backends=$BACKENDS" >> "$GITHUB_OUTPUT"
+
+  test:
+    needs: prepare
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+    strategy:
+      fail-fast: false
+      matrix:
+        backend: ${{ fromJson(needs.prepare.outputs.backends) }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Ruby from .ruby-version
+        uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: .ruby-version
+          bundler-cache: true
+
+      - name: Set up Java 11 (native mode)
+        if: env.OPTK_CI_RUN_MODE == 'native'
+        uses: actions/setup-java@v4
+        with:
+          distribution: temurin
+          java-version: '11'
+
+      - name: Install native system dependencies
+        if: env.OPTK_CI_RUN_MODE == 'native'
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y raptor2-utils
+
+      - name: Run unit tests
+        env:
+          CI: "true"
+          TESTOPTS: "-v"
+          BACKEND: ${{ matrix.backend }}
+        run: |
+          MODE="${OPTK_CI_RUN_MODE:-container}"
+          TASK="test:docker:${BACKEND}"
+          if [ "$MODE" = "container" ]; then
+            TASK="${TASK}:container"
+          elif [ "$MODE" != "native" ]; then
+            echo "Invalid OPTK_CI_RUN_MODE=$MODE (expected container or native)"
+            exit 1
+          fi
+
+          bundle exec rake "$TASK"
+
+      - name: Upload coverage reports to Codecov
+        uses: codecov/codecov-action@v5
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          flags: unittests,${{ matrix.backend }}
+          verbose: true
+          fail_ci_if_error: false

.ontoportal-testkit.yml

@@ -0,0 +1,8 @@
+component_name: ontologies_linked_data
+app_service: test-container
+backends:
+  - fs
+  - ag
+  - vo
+  - gd
+dependency_services: {}

Dockerfile

@@ -1,39 +1,21 @@
 ARG RUBY_VERSION=3.2
 ARG DISTRO=bullseye
-
-FROM ruby:$RUBY_VERSION-$DISTRO
-
-RUN apt-get update && apt-get install -y --no-install-recommends \
-    build-essential \
-    git \
-    libxml2 \
-    libxslt-dev \
-    libxslt1-dev zlib1g-dev \
-    openjdk-11-jre-headless \
-    raptor2-utils \
-    && rm -rf /var/lib/apt/lists/*
+ARG TESTKIT_BASE_IMAGE=ontoportal/testkit-base:ruby${RUBY_VERSION}-${DISTRO}
+FROM ${TESTKIT_BASE_IMAGE}
 
 WORKDIR /app
 
-# set default test config
-COPY config/config.test.rb config/config.rb
-
-COPY Gemfile* *.gemspec ./
-
-# Copy only the `version.rb` file to prevent missing file errors!
+# Copy only the `version.rb` file to prevent missing file errors
 COPY lib/ontologies_linked_data/version.rb lib/ontologies_linked_data/
 
+COPY Gemfile* *.gemspec ./
 
-#Install the exact Bundler version from Gemfile.lock (if it exists)
-RUN gem update --system && \
-    if [ -f Gemfile.lock ]; then \
+# Respect the project's Bundler lock when present.
+RUN if [ -f Gemfile.lock ]; then \
       BUNDLER_VERSION=$(grep -A 1 "BUNDLED WITH" Gemfile.lock | tail -n 1 | tr -d ' '); \
       gem install bundler -v "$BUNDLER_VERSION"; \
-    else \
-      gem install bundler; \
     fi
 
-RUN bundle config set --global no-document 'true'
 RUN bundle install --jobs 4 --retry 3
 
 COPY . ./

Gemfile

@@ -26,6 +26,7 @@ group :test do
   gem 'minitest-reporters'
   gem 'mocha', '~> 2.7'
   gem 'mock_redis', '~> 0.5'
+  gem 'ontoportal_testkit', github: 'alexskr/ontoportal_testkit', branch: 'main'
   gem 'pry'
   gem 'rack-test', '~> 0.6'
   gem 'simplecov'
@@ -41,5 +42,6 @@ end
 gem 'goo', github: 'ncbo/goo', branch: 'ontoportal-lirmm-development'
 gem 'sparql-client', github: 'ncbo/sparql-client', branch: 'ontoportal-lirmm-development'
 
+
 gem 'public_suffix', '~> 5.1.1'
 gem 'net-imap', '~> 0.4.18'

Gemfile.lock

@@ -1,3 +1,11 @@
+GIT
+  remote: https://github.com/alexskr/ontoportal_testkit.git
+  revision: 5138aa94c028ec97adeaf1f7a5ed9f1c40b12950
+  branch: main
+  specs:
+    ontoportal_testkit (0.1.0)
+      rake (>= 13.0)
+
 GIT
   remote: https://github.com/ncbo/goo.git
   revision: 13a8559a2346cc8320d7d36046646907bfa8a27c
@@ -96,17 +104,10 @@ GEM
       logger
     faraday-net_http (3.4.2)
       net-http (~> 0.5)
-    ffi (1.17.3)
     ffi (1.17.3-aarch64-linux-gnu)
-    ffi (1.17.3-aarch64-linux-musl)
-    ffi (1.17.3-arm-linux-gnu)
-    ffi (1.17.3-arm-linux-musl)
     ffi (1.17.3-arm64-darwin)
-    ffi (1.17.3-x86-linux-gnu)
-    ffi (1.17.3-x86-linux-musl)
     ffi (1.17.3-x86_64-darwin)
     ffi (1.17.3-x86_64-linux-gnu)
-    ffi (1.17.3-x86_64-linux-musl)
     hashdiff (1.2.1)
     htmlentities (4.3.4)
     http-accept (1.7.0)
@@ -292,15 +293,9 @@ GEM
 
 PLATFORMS
   aarch64-linux-gnu
-  aarch64-linux-musl
-  arm-linux-gnu
-  arm-linux-musl
   arm64-darwin
-  x86-linux-gnu
-  x86-linux-musl
   x86_64-darwin
   x86_64-linux-gnu
-  x86_64-linux-musl
 
 DEPENDENCIES
   activesupport
@@ -321,6 +316,7 @@ DEPENDENCIES
   oj (~> 3.0)
   omni_logger
   ontologies_linked_data!
+  ontoportal_testkit!
   pony
   pry
   public_suffix (~> 5.1.1)
@@ -362,17 +358,10 @@ CHECKSUMS
   eventmachine (1.2.7) sha256=994016e42aa041477ba9cff45cbe50de2047f25dd418eba003e84f0d16560972
   faraday (2.14.1) sha256=a43cceedc1e39d188f4d2cdd360a8aaa6a11da0c407052e426ba8d3fb42ef61c
   faraday-net_http (3.4.2) sha256=f147758260d3526939bf57ecf911682f94926a3666502e24c69992765875906c
-  ffi (1.17.3) sha256=0e9f39f7bb3934f77ad6feab49662be77e87eedcdeb2a3f5c0234c2938563d4c
   ffi (1.17.3-aarch64-linux-gnu) sha256=28ad573df26560f0aedd8a90c3371279a0b2bd0b4e834b16a2baa10bd7a97068
-  ffi (1.17.3-aarch64-linux-musl) sha256=020b33b76775b1abacc3b7d86b287cef3251f66d747092deec592c7f5df764b2
-  ffi (1.17.3-arm-linux-gnu) sha256=5bd4cea83b68b5ec0037f99c57d5ce2dd5aa438f35decc5ef68a7d085c785668
-  ffi (1.17.3-arm-linux-musl) sha256=0d7626bb96265f9af78afa33e267d71cfef9d9a8eb8f5525344f8da6c7d76053
   ffi (1.17.3-arm64-darwin) sha256=0c690555d4cee17a7f07c04d59df39b2fba74ec440b19da1f685c6579bb0717f
-  ffi (1.17.3-x86-linux-gnu) sha256=868a88fcaf5186c3a46b7c7c2b2c34550e1e61a405670ab23f5b6c9971529089
-  ffi (1.17.3-x86-linux-musl) sha256=f0286aa6ef40605cf586e61406c446de34397b85dbb08cc99fdaddaef8343945
   ffi (1.17.3-x86_64-darwin) sha256=1f211811eb5cfaa25998322cdd92ab104bfbd26d1c4c08471599c511f2c00bb5
   ffi (1.17.3-x86_64-linux-gnu) sha256=3746b01f677aae7b16dc1acb7cb3cc17b3e35bdae7676a3f568153fb0e2c887f
-  ffi (1.17.3-x86_64-linux-musl) sha256=086b221c3a68320b7564066f46fed23449a44f7a1935f1fe5a245bd89d9aea56
   goo (0.0.2)
   hashdiff (1.2.1) sha256=9c079dbc513dfc8833ab59c0c2d8f230fa28499cc5efb4b8dd276cf931457cd1
   htmlentities (4.3.4) sha256=125a73c6c9f2d1b62100b7c3c401e3624441b663762afa7fe428476435a673da
@@ -412,6 +401,7 @@ CHECKSUMS
   oj (3.16.15) sha256=4d3324cac3e8fef54c0fa250b2af26a16dadd9f9788a1d6b1b2098b793a1b2cd
   omni_logger (0.1.4) sha256=b61596f7d96aa8426929e46c3500558d33e838e1afd7f4735244feb4d082bb3e
   ontologies_linked_data (0.0.1)
+  ontoportal_testkit (0.1.0)
   ostruct (0.6.3) sha256=95a2ed4a4bd1d190784e666b47b2d3f078e4a9efda2fccf18f84ddc6538ed912
   parallel (1.27.0) sha256=4ac151e1806b755fb4e2dc2332cbf0e54f2e24ba821ff2d3dcf86bf6dc4ae130
   parser (3.3.10.1) sha256=06f6a725d2cd91e5e7f2b7c32ba143631e1f7c8ae2fb918fc4cebec187e6a688