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54 changes: 28 additions & 26 deletions Gemfile.lock
Original file line number Diff line number Diff line change
Expand Up @@ -21,15 +21,15 @@ GEM
i18n (>= 1.6, < 2)
minitest (>= 5.1)
tzinfo (~> 2.0)
addressable (2.8.6)
public_suffix (>= 2.0.2, < 6.0)
addressable (2.8.7)
public_suffix (>= 2.0.2, < 7.0)
ast (2.4.2)
base64 (0.2.0)
bigdecimal (3.1.5)
bigdecimal (3.1.8)
coderay (1.1.3)
concurrent-ruby (1.2.2)
excon (0.109.0)
faraday (2.7.12)
concurrent-ruby (1.3.3)
excon (0.111.0)
faraday (2.8.1)
base64
faraday-net_http (>= 2.0, < 3.1)
ruby2_keywords (>= 0.0.4)
Expand All @@ -41,48 +41,50 @@ GEM
faraday-multipart (1.0.4)
multipart-post (~> 2)
faraday-net_http (3.0.2)
i18n (1.14.1)
i18n (1.14.5)
concurrent-ruby (~> 1.0)
json (2.6.3)
json (2.7.2)
language_server-protocol (3.17.0.3)
lz4-ruby (0.3.3)
method_source (1.0.0)
minitest (5.20.0)
method_source (1.1.0)
minitest (5.24.1)
minitest-hooks (1.5.1)
minitest (> 5.3)
multi_json (1.15.0)
multipart-post (2.3.0)
oj (3.16.3)
multipart-post (2.4.1)
oj (3.16.4)
bigdecimal (>= 3.0)
parallel (1.23.0)
parser (3.2.2.4)
parallel (1.25.1)
parser (3.3.4.0)
ast (~> 2.4.1)
racc
pry (0.14.2)
coderay (~> 1.1)
method_source (~> 1.0)
public_suffix (5.0.4)
racc (1.7.3)
public_suffix (5.1.1)
racc (1.8.0)
rainbow (3.1.1)
rake (13.1.0)
regexp_parser (2.8.2)
rexml (3.2.6)
rubocop (1.57.2)
rake (13.2.1)
regexp_parser (2.9.2)
rexml (3.3.2)
strscan
rubocop (1.65.0)
json (~> 2.3)
language_server-protocol (>= 3.17.0)
parallel (~> 1.10)
parser (>= 3.2.2.4)
parser (>= 3.3.0.2)
rainbow (>= 2.2.2, < 4.0)
regexp_parser (>= 1.8, < 3.0)
regexp_parser (>= 2.4, < 3.0)
rexml (>= 3.2.5, < 4.0)
rubocop-ast (>= 1.28.1, < 2.0)
rubocop-ast (>= 1.31.1, < 2.0)
ruby-progressbar (~> 1.7)
unicode-display_width (>= 2.4.0, < 3.0)
rubocop-ast (1.30.0)
parser (>= 3.2.1.0)
rubocop-ast (1.31.3)
parser (>= 3.3.1.0)
ruby-progressbar (1.13.0)
ruby2_keywords (0.0.5)
spawnling (2.1.5)
strscan (3.1.0)
tzinfo (2.0.6)
concurrent-ruby (~> 1.0)
unicode-display_width (2.5.0)
Expand All @@ -103,4 +105,4 @@ DEPENDENCIES
rubocop (~> 1.43)

BUNDLED WITH
2.3.22
2.4.22
55 changes: 0 additions & 55 deletions test/models/test_class.rb
Original file line number Diff line number Diff line change
@@ -1,6 +1,5 @@
# frozen_string_literal: true

require 'faraday/follow_redirects'
require_relative '../test_case'

class ClassTest < LinkedData::Client::TestCase
Expand All @@ -16,58 +15,4 @@ def test_find
assert_equal ontology, cls.links['ontology']
assert cls.hasChildren
end

# Test PURL generation for a class in an OWL format ontology
def test_purl_owl
cls = LinkedData::Client::Models::Class.find(
'http://bioontology.org/ontologies/Activity.owl#Activity',
'https://data.bioontology.org/ontologies/BRO'
)
refute_nil cls

res = fetch_response(cls.purl)
assert_equal 200, res.status
assert_equal 'https://bioportal.bioontology.org/ontologies/BRO'\
'?p=classes&conceptid=http%3A%2F%2Fbioontology.org%2Fontologies%2FActivity.owl%23Activity',
res.env[:url].to_s
end

# Test PURL generation for a class in a UMLS format ontology
def test_purl_umls
cls = LinkedData::Client::Models::Class.find(
'http://purl.bioontology.org/ontology/SNOMEDCT/64572001',
'https://bioportal.bioontology.org/ontologies/SNOMEDCT'
)
refute_nil cls

res = fetch_response(cls.purl)
assert_equal 200, res.status
assert_equal 'https://bioportal.bioontology.org/ontologies/SNOMEDCT?p=classes&conceptid=64572001',
res.env[:url].to_s
end

# Test PURL generation for a class in an OBO format ontology
def test_purl_obo
cls = LinkedData::Client::Models::Class.find(
'http://purl.obolibrary.org/obo/DOID_4',
'https://bioportal.bioontology.org/ontologies/DOID'
)
refute_nil cls

res = fetch_response(cls.purl)
assert_equal 200, res.status
assert_equal 'https://bioportal.bioontology.org/ontologies/DOID'\
'?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FDOID_4',
res.env[:url].to_s
end

private

def fetch_response(url)
conn = Faraday.new do |f|
f.response :follow_redirects
f.adapter Faraday.default_adapter
end
conn.get(url)
end
end
59 changes: 59 additions & 0 deletions test/models/test_class_purl.rb
Original file line number Diff line number Diff line change
@@ -0,0 +1,59 @@
# frozen_string_literal: true

require_relative '../test_case'

class ClassTest < LinkedData::Client::TestCase

# Test PURL generation for a class in an OWL format ontology
def test_purl_owl
cls = LinkedData::Client::Models::Class.find(
'http://bioontology.org/ontologies/Activity.owl#Activity',
'https://data.bioontology.org/ontologies/BRO'
)
refute_nil cls

res = fetch_response(cls.purl)
assert_equal 302, res.status
assert_equal 'https://bioportal.bioontology.org/ontologies/BRO'\
'/classes?conceptid=http%3A%2F%2Fbioontology.org%2Fontologies%2FActivity.owl%23Activity',
res.headers['location']
end

# Test PURL generation for a class in a UMLS format ontology
def test_purl_umls
cls = LinkedData::Client::Models::Class.find(
'http://purl.bioontology.org/ontology/SNOMEDCT/64572001',
'https://bioportal.bioontology.org/ontologies/SNOMEDCT'
)
refute_nil cls

res = fetch_response(cls.purl)
assert_equal 302, res.status
assert_equal 'https://bioportal.bioontology.org/ontologies/SNOMEDCT/classes/64572001',
res.headers['location']
end

# Test PURL generation for a class in an OBO format ontology
def test_purl_obo
cls = LinkedData::Client::Models::Class.find(
'http://purl.obolibrary.org/obo/DOID_4',
'https://bioportal.bioontology.org/ontologies/DOID'
)
refute_nil cls

res = fetch_response(cls.purl)
assert_equal 302, res.status
assert_equal 'https://bioportal.bioontology.org/ontologies/DOID'\
'/classes?conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FDOID_4',
res.headers['location']
end

private

def fetch_response(url)
conn = Faraday.new do |f|
f.adapter Faraday.default_adapter
end
conn.get(url)
end
end
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