chore(deps): bump the github-actions group across 1 directory with 4 updates

.github/workflows/conventional-prs.yml

@@ -12,6 +12,6 @@ jobs:
   title-format:
     runs-on: ubuntu-latest
     steps:
-      - uses: amannn/action-semantic-pull-request@v5.5.3
+      - uses: amannn/action-semantic-pull-request@v6.1.1
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/main.yml

@@ -18,6 +18,7 @@ jobs:
     runs-on: ubuntu-latest
     permissions:
       actions: write
+
     env:
       FTP_PASSWORD: ${{ secrets.FTP_PASSWORD }}
       ZENODO_TOKEN: ${{ secrets.ZENODO_TOKEN }}
@@ -28,7 +29,7 @@ jobs:
       BENCHMARK_GIAB_NA12878_TWIST_TOKEN: ${{ secrets.BENCHMARK_GIAB_NA12878_TWIST_TOKEN }}
       SNAKEMAKE_STORAGE_ZENODO_ACCESS_TOKEN: ${{ secrets.SNAKEMAKE_STORAGE_ZENODO_ACCESS_TOKEN }}
     steps:
-      - uses: 8BitJonny/gh-get-current-pr@3.0.0
+      - uses: 8BitJonny/gh-get-current-pr@4.0.0
         id: pr
         with:
           sha: ${{ github.event.pull_request.head.sha }}
@@ -55,7 +56,7 @@ jobs:
           docker-images: false
 
       - name: Check out repository code
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: Download reference genome
         uses: snakemake/snakemake-github-action@v2
@@ -82,7 +83,7 @@ jobs:
       # because their modification dates are too new or too old.
       # (as git does not preserve modification dates)
       - name: Fix modification dates
-        uses: snakemake/snakemake-github-action@v2
+        uses: snakemake/snakemake-github-action@v2.0.3
         with:
           directory: "."
           snakefile: "workflow/Snakefile"
@@ -92,7 +93,7 @@ jobs:
             pip install snakemake-storage-plugin-http
 
       - name: Run analysis
-        uses: snakemake/snakemake-github-action@v2
+        uses: snakemake/snakemake-github-action@v2.0.3
         with:
           directory: "."
           snakefile: "workflow/Snakefile"
@@ -103,7 +104,7 @@ jobs:
             pip install snakemake-storage-plugin-http
 
       - name: Create report
-        uses: snakemake/snakemake-github-action@v2
+        uses: snakemake/snakemake-github-action@v2.0.3
         with:
           directory: "."
           snakefile: "workflow/Snakefile"
@@ -113,8 +114,7 @@ jobs:
             pip install snakemake-storage-plugin-http
 
       - name: Upload report as artifact
-
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: report
           path: report.zip

config/config.yaml

@@ -779,3 +779,6 @@ custom-benchmarks:
 limit-regions:
   activate: false
 reference-genome: grch38
+
+default-resources:
+  - mem_mb=14336

workflow/Snakefile

@@ -18,7 +18,7 @@ module benchmark:
         github(
             "snakemake-workflows/dna-seq-benchmark",
             path="workflow/Snakefile",
-            tag="v1.13.0",
+            tag="v1.14.0",
         )
     config:
         config