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feat: add deep-variant-NA12878-200M-agilent #51

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feat: add deep-variant-NA12878-200M-agilent #51

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672ef92
Update config.yaml
mvthuy278 May 22, 2025
0b2a70f
Update config.yaml
mvthuy278 May 22, 2025
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Merge branch 'main' into patch-1
famosab Jun 25, 2025
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17 changes: 17 additions & 0 deletions config/config.yaml
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Expand Up @@ -745,6 +745,23 @@ variant-calls:
filename: NA12878_200M.haplotypecaller.filtered.vcf.gz
benchmark: giab-NA12878-agilent-200M
rename-contigs: true
deep-variant-NA12878-200M-agilent:
labels:
site: ioit
pipeline: deepvariant
trimming: bwa
read-mapping: bwa
base-quality-recalibration: gatk4
realignment: none
variant-detection: deepvariant
genotyping: none
reads: 200M
subcategory: NA12878
zenodo:
deposition: 15487705
filename: A006850052_NA12878_200M_BWA_DV_STANDART.vcf
benchmark: giab-NA12878-agilent-200M
rename-contigs: true
custom-benchmarks:
giab-NA12878-agilent-200M:
zenodo:
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