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fix bug (when summit in merged peaks is None) #28

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fix bug (when summit in merged peaks is None) #28

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3 changes: 2 additions & 1 deletion idr/idr.py
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Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,7 @@

def mean(items):
items = list(items)
if len(items)==0: return 0.0
return sum(items)/float(len(items))

import idr
Expand Down Expand Up @@ -349,7 +350,7 @@ def build_idr_output_line_with_bed6(
rv.append( "%.5f" % signal )
if output_file_type == 'narrowPeak':
rv.append( "%i" % int(
mean(x.summit-x.start for x in m_pk.pks[key])
mean(x.summit-x.start for x in m_pk.pks[key] if x.summit != None)
))


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