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fix call to determine_read_strand_params in PolyAReads #3

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fix call to determine_read_strand_params in PolyAReads #3

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2 changes: 1 addition & 1 deletion grit/files/reads.py
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Original file line number Diff line number Diff line change
Expand Up @@ -957,7 +957,7 @@ def init(self, reverse_read_strand=None, pairs_are_opp_strand=None,
if reverse_read_strand in ('auto', None):
if ref_genes in([], None):
raise ValueError, "Determining reverse_read_strand requires reference genes"
reverse_read_strand_params = Reads.determine_read_strand_param(
reverse_read_strand_params = determine_read_strand_params(
self, ref_genes, pairs_are_opp_strand, 'tes_exon',
300, 50 )
assert 'stranded' in reverse_read_strand_params
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