PCA_vs_VAE

Brief assessment of predictive and generative capabilities of PCA and VAE for Protein Design

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
.ipynb_checkpoints		.ipynb_checkpoints
figures		figures
figures_old		figures_old
.DS_Store		.DS_Store
Best_ConvVAE.ckpt		Best_ConvVAE.ckpt
CreiLOV_DMS_data.pkl		CreiLOV_DMS_data.pkl
CreiLOV_MSA_UniRef90_2.fasta		CreiLOV_MSA_UniRef90_2.fasta
CreiLOV_MSA_UniRef90_2_reweights.npy		CreiLOV_MSA_UniRef90_2_reweights.npy
CreiLOV_MSA_data_splits.pkl		CreiLOV_MSA_data_splits.pkl
FinalProject_CBE562_Stats_NB_v0.docx		FinalProject_CBE562_Stats_NB_v0.docx
FinalProject_CBE562_Stats_NB_v1.docx		FinalProject_CBE562_Stats_NB_v1.docx
FinalProject_CBE562_Stats_NB_v1.pdf		FinalProject_CBE562_Stats_NB_v1.pdf
PC36_PC14_Feature_Contribution.png		PC36_PC14_Feature_Contribution.png
PCA_example.ipynb		PCA_example.ipynb
Presentation_Stats_FinalProject_Blalock_v1.pdf		Presentation_Stats_FinalProject_Blalock_v1.pdf
README.md		README.md
Stats_FinalProject.ipynb		Stats_FinalProject.ipynb
Stats_FinalProject_Blalock_v0.pptx		Stats_FinalProject_Blalock_v0.pptx
Train_ConvVAE.py		Train_ConvVAE.py
conv_vae_model.py		conv_vae_model.py
finalproject_cbe562_fall2023.pdf		finalproject_cbe562_fall2023.pdf
functions.py		functions.py
reward_model.py		reward_model.py
~$nalProject_CBE562_Stats_NB_v0.docx		~$nalProject_CBE562_Stats_NB_v0.docx

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