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dfit command usage

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Roden Luo edited this page Dec 13, 2024 · 6 revisions

For dfit 

open 6AR6
open 8898 from emdb
# set level
dfit #1 in #2
fit #1 in #2
open 6AR6
rmsd #1 to #3
save dfit_top_1_0-6ar6.cif models #1

For dfit disk 

dfit disk strDir D:\GIT\DiffFit\case_study_data\8SMK_composite\transformed\subunits_cif inMap D:\GIT\DiffFit\case_study_data\8SMK_composite\transformed\emd_40589.map level 2.0

dfit disk strDir DiffFit-main\dev_data\input\domain_fit_demo_3domains\subunits_cif inMap DiffFit-main\dev_data\input\domain_fit_demo_3domains\density2.mrc level 2.0

For dfit change_path 

dfit path show res_dir 
dfit path vol res_dir old_path new_path
dfit path mol res_dir old_path new_path

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