qvalue

Fast, lightweight Python implementation of Storey’s q-values with optional bagging for stable π₀ estimation.

Method: J.D. Storey, & R. Tibshirani, Statistical significance for genomewide studies, Proc. Natl. Acad. Sci. U.S.A. 100 (16) 9440-9445, https://doi.org/10.1073/pnas.1530509100 (2003).

Install

pip install numpy scipy
# then clone or copy the single file into your project

API

See function docstrings.