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…in bedpe + gridss & noticed speed issue with building karyograph in a R3.5.1 build - added GenomicRanges:: to calls to order() in karyograph() to resolve this
…arams in ramip_stub & modded to Rcplex2 so that CPLEX environment is closed at the end of MIP run - so that custom CPLEX params persist to later iterations
…ow performance in R-3.5.1
Conflicts: R/JaBbA.R inst/extdata/jba
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merged in ZC dev and exposing max threads