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Slow down #217

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5 changes: 4 additions & 1 deletion src/consensus.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,9 @@ using namespace Rcpp;
#include "../inst/include/TreeTools/ClusterTable.h" /* for ClusterTable */

#include <algorithm> /* for fill */
#include <chrono>
#include <thread>
using namespace std::chrono_literals;
#include <array> /* for array */
#include <vector> /* for vector */

Expand All @@ -19,7 +22,7 @@ RawMatrix consensus_tree(const List trees, const NumericVector p) {
int16 w = 0;
int16 L, R, N, W;
int16 L_j, R_j, N_j, W_j;

std::this_thread::sleep_for(10ms);
const int32 n_trees = trees.length();
const int32 frac_thresh = int32(n_trees * p[0]) + 1;
const int32 thresh = frac_thresh > n_trees ? n_trees : frac_thresh;
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