refactor: consolidate duplicate prompt files (#2472)

autobot-backend/constants/path_constants.py

@@ -18,7 +18,7 @@ class PathConstants:
     PROJECT_ROOT: Path = Path(__file__).parent.parent.parent
 
     # Prompt templates (#793)
-    PROMPTS_DIR: Path = PROJECT_ROOT / "prompts"
+    PROMPTS_DIR: Path = Path(__file__).parent.parent / "resources" / "prompts"
 
     # Core directories (updated for #781 reorganization)
     CONFIG_DIR: Path = PROJECT_ROOT / "infrastructure" / "shared" / "config"

autobot-infrastructure/shared/scripts/populate_knowledge_base.py

@@ -31,7 +31,7 @@ async def _add_documentation_to_kb_block_5():
         "README.md",
         "CLAUDE.md",
         "docs/**/*.md",
-        "prompts/**/*.md",
+        "autobot-backend/resources/prompts/**/*.md",
         "*.md",  # Any markdown files in root
     ]
 
@@ -77,7 +77,7 @@ def determine_category(rel_path: str) -> str:
             ("docs/developer", "developer-docs"),
             ("docs/user_guide", "user-guide"),
             ("docs/reports", "reports"),
-            ("prompts", "prompts"),
+            ("autobot-backend/resources/prompts", "prompts"),
         ]
         # Check exact matches first
         if rel_path == "README.md":

docs/developer/THINKING_TOOLS_CONFIGURATION.md

@@ -132,7 +132,7 @@ This guide explains how to ensure these tools are ALWAYS used for complex reason
 
 ### Step 1: System Prompt Configuration
 
-**File**: `prompts/chat/system_prompt.md`
+**File**: `autobot-backend/resources/prompts/chat/system_prompt.md`
 
 The system prompt has been updated to include mandatory thinking tool usage instructions. Section added:
 
@@ -473,7 +473,7 @@ def _ensure_thinking_tools(self, available_tools):
 ## References
 
 ### Documentation Files:
-- System Prompt: `prompts/chat/system_prompt.md`
+- System Prompt: `autobot-backend/resources/prompts/chat/system_prompt.md`
 - Sequential Thinking API: `autobot-backend/api/sequential_thinking_mcp.py`
 - Structured Thinking API: `autobot-backend/api/structured_thinking_mcp.py`
 - LLM Interface: `src/llm_interface.py`
@@ -484,7 +484,7 @@ def _ensure_thinking_tools(self, available_tools):
 
 ### Configuration:
 - Environment: `.env` (AUTOBOT_DEFAULT_LLM_MODEL)
-- Prompts: `prompts/chat/system_prompt.md`
+- Prompts: `autobot-backend/resources/prompts/chat/system_prompt.md`
 - Backend: `backend/main.py` (router registration)
 
 ---
@@ -494,7 +494,7 @@ def _ensure_thinking_tools(self, available_tools):
 For issues or questions about thinking tools configuration:
 
 1. Check this guide first
-2. Review system prompt: `prompts/chat/system_prompt.md`
+2. Review system prompt: `autobot-backend/resources/prompts/chat/system_prompt.md`
 3. Check backend logs: `logs/backend.log`
 4. Test MCP endpoints with curl
 5. Verify model is Mistral 7B or better

docs/fixes/CONVERSATION_TERMINATION_REPORT.md

@@ -83,7 +83,7 @@ def detect_exit_intent(message: str) -> bool:
 - ✅ Ignores exit words in questions (e.g., "how do I exit vim?")
 
 #### Layer 2: Enhanced System Prompt
-**File**: `prompts/chat/system_prompt.md`
+**File**: `autobot-backend/resources/prompts/chat/system_prompt.md`
 
 **Key Sections**:
 ```markdown
@@ -192,7 +192,7 @@ TestSystemPromptLoading::test_conversation_continuation_rules_in_prompt PASSED
    - Added fallback prompt for safety
 
 ### Created Files
-1. **`prompts/chat/system_prompt.md`**
+1. **`autobot-backend/resources/prompts/chat/system_prompt.md`**
    - Comprehensive AutoBot system prompt
    - Explicit conversation continuation rules
    - Examples of correct behavior
@@ -235,7 +235,7 @@ python -m pytest tests/test_conversation_handling_fix.py::TestRegressionPreventi
 
 ### Production Deployment Steps
 1. Sync `src/chat_workflow_manager.py` to AI Stack VM (172.16.168.24)
-2. Sync `prompts/chat/` directory to AI Stack VM
+2. Sync `autobot-backend/resources/prompts/chat/` directory to AI Stack VM
 3. Sync `tests/` directory for validation
 4. Run test suite on production
 5. Monitor logs for exit intent detection
@@ -245,7 +245,7 @@ python -m pytest tests/test_conversation_handling_fix.py::TestRegressionPreventi
 Watch for these log messages:
 ```
 [ChatWorkflowManager] User explicitly requested to exit conversation: {session_id}
-[ChatWorkflowManager] Loaded system prompt from prompts/chat/system_prompt.md
+[ChatWorkflowManager] Loaded system prompt from autobot-backend/resources/prompts/chat/system_prompt.md
 Exit intent detected: {phrase}
 ```
 
@@ -289,7 +289,7 @@ Exit intent detected: {phrase}
 - **Memory MCP Entity**: "Conversation Termination Bug 2025-10-03"
 - **Solution Entity**: "Conversation Handling Fix 2025-10-03"
 - **Test File**: `tests/test_conversation_handling_fix.py`
-- **System Prompt**: `prompts/chat/system_prompt.md`
+- **System Prompt**: `autobot-backend/resources/prompts/chat/system_prompt.md`
 
 ## Conclusion