The TENxXeniumData package aims to contain a collection of Xenium spatial
transcriptomics datasets provided by 10x Genomics. These datasets have been
formatted into the Bioconductor classes, the SpatialExperiment or
SpatialFeatureExperiment (SFE), to facilitate seamless integration into
various applications, including examples, demonstrations, and tutorials.
The constructed data objects include gene expression profiles, per-transcript
location data, centroid, segmentation boundaries
(e.g., cell or nucleus boundaries), and image. More datasets will be added
in later versions.
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TENxXeniumData")