MokaGuys
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dnanexus_swiss_army_SNP_bcftools_filter
dnanexus_swiss_army_SNP_bcftools_filter PublicThis repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks
Shell 2
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automate_demultiplex
automate_demultiplex PublicScripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
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dnanexus_happy
dnanexus_happy PublicDNAnexus app comparing a query VCF to a truth VCF to calculate performance metrics including sensitivity and precision using hap.py and vcfeval
Shell 1
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dnanexus_ED_cnv_calling
dnanexus_ED_cnv_calling PublicPerforms CNV calling using ExomeDepth.
Shell 1
Repositories
- automate_demultiplex Public
Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
moka-guys/automate_demultiplex’s past year of commit activity - gstt_primer_design Public
moka-guys/gstt_primer_design’s past year of commit activity - dnanexus_congenica_upload Public
DNAnexus app for uploading samples to the Congenica analysis platform
moka-guys/dnanexus_congenica_upload’s past year of commit activity - dnanexus_multiqc Public
DNAnexus app running MultiQC to generate run wide quality control (QC) using the outputs from MokaAMP, MokaPipe and MokaWES pipelines
moka-guys/dnanexus_multiqc’s past year of commit activity - dnanexus_ED_readcount_analysis Public
This app calculates the readcount for a batch of samples for CNV calling using ExomeDepth.
moka-guys/dnanexus_ED_readcount_analysis’s past year of commit activity - dnanexus_oncodeep_sftp_download Public
DNANexus Applet that downloads necessary sample analysis files to be imported into the GSTT Variant Dashboard
moka-guys/dnanexus_oncodeep_sftp_download’s past year of commit activity - crontab_oncodeep_sftp_download Public
Crontab to start downloading of sample analysis files from Oncodeep SFTP for GSTT Variant Dashboard
moka-guys/crontab_oncodeep_sftp_download’s past year of commit activity
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