Correctly parseInt the SUPP entry, not the string itself.

[ASLeonard]

Hi,
I'm not sure what triggers this if/else condition as I've used Jasmine for many other VCFs without issue, but this line will trivally cause a crash as "SUPP" is not an integer.
 

Jasmine/src/VariantOutput.java

Line 407 in 12b3862

varCallsCount = Integer.parseInt("SUPP");

 
Other lines in the file have 

Integer.parseInt(entry.getInfo("SUPP"));

 
and replacing the issue on L407 with that fixes this problem.

I'll still test this on some old datasets to make sure there are no unintended consequences, but should be harmless.
 
Best,
Alex

[YannLeGuen]

This would probably solve the following issue #58