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Create Python package #19

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@jeangud jeangud commented Aug 12, 2024 •
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Description

The current setup seem to require that satclip be on a customized $PYTHONPATH, for example with:

export PYTHONPATH=${PYTHONPATH}:/path/to/satclip/satclip/

Moreover, it does not list dependencies and versioning (see Issue Missing requirements.txt file #8)

This PR proposes to setup satclip as a Python package to install it just like any other Python package, and facilitating its use from any directory, without the need to setup the PYTHONPATH.

Usage: pip install .

Example use cases:

  • Instantiate the SatCLIP PyTorch model: from satclip.model import SatCLIP
  • Re-use parts of satclip in different training scripts from satclip.location_encoder import LocationEncoder or again from satclip.main import SatCLIPLightningModule

PR changes

  • Added a pyproject.toml using setuptools as a build system, following the latest recommendations from Python packaging
  • Lists out main dependencies (albumentations, lightning, rasterio, torchgeo)
  • Modified internal imports to be relative to satclip package directory

Testing

  • From the repo top directory pip install . runs succesfully
  • Able to import satclip from any folder, without setting $PYTHONPATH:
$ cd ~
$ pwd
/home/user
$ echo $PYTHONPATH

$ python
Python 3.11.0 (main, Jul 29 2024, 13:47:50) [GCC 12.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import satclip
/home/user/.pyenv/versions/3.11.0/lib/python3.11/site-packages/kornia/feature/lightglue.py:44: FutureWarning: `torch.cuda.amp.custom_fwd(args...)` is deprecated. Please use `torch.amp.custom_fwd(args..., device_type='cuda')` instead.
  @torch.cuda.amp.custom_fwd(cast_inputs=torch.float32)
>>>
Example log output (click to expand) Log from pip install . 
$ pip install .
Processing /home/user/satclip
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting albumentations (from satclip==0.0.1)
Using cached albumentations-1.4.13-py3-none-any.whl.metadata (38 kB)
Collecting lightning==2.2.2 (from satclip==0.0.1)
Using cached lightning-2.2.2-py3-none-any.whl.metadata (53 kB)
Collecting pandas (from satclip==0.0.1)
Using cached pandas-2.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
Collecting rasterio>=1.3.10 (from satclip==0.0.1)
Using cached rasterio-1.3.10-cp311-cp311-manylinux2014_x86_64.whl.metadata (14 kB)
Collecting torchgeo>=0.5 (from satclip==0.0.1)
Using cached torchgeo-0.5.2-py3-none-any.whl.metadata (20 kB)
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Requirement already satisfied: importlib-resources>=1.4.0 in /home/user/.pyenv/versions/3.11.0/lib/python3.11/site-packages (from typeshed-client>=2.1.0->jsonargparse[signatures]<5.0,>=4.27.7; extra == "pytorch-extra"->lightning[pytorch-extra]>=2->torchgeo>=0.5->satclip==0.0.1) (6.4.0)
Using cached lightning-2.2.2-py3-none-any.whl (2.0 MB)
Using cached rasterio-1.3.10-cp311-cp311-manylinux2014_x86_64.whl (21.5 MB)
Using cached torchgeo-0.5.2-py3-none-any.whl (381 kB)
Using cached pandas-2.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB)
Using cached albumentations-1.4.13-py3-none-any.whl (171 kB)
Building wheels for collected packages: satclip
Building wheel for satclip (pyproject.toml) ... done
Created wheel for satclip: filename=satclip-0.0.1-py3-none-any.whl size=4017354 sha256=4e4af561efcaea8c268b353480d7a87f575904e9055dc0b653f15544292537c1
Stored in directory: /tmp/pip-ephem-wheel-cache-fal20ggn/wheels/3e/73/bd/53cd44af9d38c274b7928db633e7a5b0a095d97c6ad8fe0686
Successfully built satclip
Installing collected packages: rasterio, pandas, albumentations, lightning, torchgeo, satclip
Successfully installed albumentations-1.4.13 lightning-2.2.2 pandas-2.2.2 rasterio-1.3.10 satclip-0.0.1 torchgeo-0.5.2

jeangud
jeangud commented Aug 13, 2024
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pyproject.toml
@@ -0,0 +1,39 @@
[build-system]
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@jeangud jeangud Aug 13, 2024

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This file is the main change in this PR

@konstantinklemmer
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konstantinklemmer commented Sep 18, 2024

Thank you so much for this @jeangud! Just a quick note: I am taking some time off currently but will get to this as soon as I am back to working. Thanks for your contributions to this project.

@elijahrockers elijahrockers mentioned this pull request Apr 7, 2025
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@jeangud @konstantinklemmer