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microbiome / mia Public

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DRAFT: Test/simplify transformation tests#749

Open

raivo-otus wants to merge 14 commits intomicrobiome:develmicrobiome/mia:develfrom

raivo-otus:test/simplify-transformation-testsraivo-otus/mia:test/simplify-transformation-testsCopy head branch name to clipboard

Conversation Commits14 (14)Checks Files changed

Open

DRAFT: Test/simplify transformation tests#749
raivo-otus wants to merge 14 commits intomicrobiome:develfrom
raivo-otus:test/simplify-transformation-tests

Commits

Commits on Jul 10, 2025

Test transformAssay(method = clr) against vegan::decostand
raivo-otus
committed
Remove reduntant expect_error()
raivo-otus
committed
Remove unnecessary lines
raivo-otus
committed
Simplify Hellinger transformation test
raivo-otus
committed
Add test for rCLR transformation
raivo-otus
committed
Add missing test for rCLR equivalence when zero added to samples
raivo-otus
committed
Remove some unnecessary calculations, test only against vegan
raivo-otus
committed
Remove redundant rank calculation, and add rank test for vegan equivalence
raivo-otus
committed

Commits on Dec 16, 2025

Merge branch 'devel' into test/simplify-transformation-tests
raivo-otus
committed
relabundance vs decostand
raivo-otus
committed
pa vs decostand
raivo-otus
committed
remove redundant test
raivo-otus
committed
refactor to appropriate section
raivo-otus
committed
standardize vs decostand
raivo-otus
committed

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