Update documentation and packages

.github/pull_request_template.md

@@ -18,6 +18,6 @@ your repository's standards.
 --->
 - [ ] The code runs successfully.
 
-```commandline
+```console
 HERE IS SOME COMMAND LINE OUTPUT
 ```

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.8.5
+    rev: 1.9.1
     hooks:
       - id: nbqa-ruff
         args:
@@ -17,7 +17,7 @@ repos:
           - --profile=black
 
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v5.0.0
     hooks:
       - id: trailing-whitespace
       - id: check-docstring-first
@@ -48,7 +48,7 @@ repos:
       - id: python-no-log-warn
 
   - repo: https://github.com/PyCQA/isort
-    rev: 5.12.0
+    rev: 6.0.1
     hooks:
       - id: isort
         name: Run isort to sort imports
@@ -61,7 +61,7 @@ repos:
           - --line-length=80
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.4.10
+    rev: v0.11.6
     hooks:
       - id: ruff
         types_or: [python,pyi]

Makefile

@@ -1,27 +1,27 @@
 # Here is some general information on Makefile's so that you can grow this out:
 # https://www.gnu.org/software/make/manual/html_node/Introduction.html
-default: create-requirements lint
+.DEFAULT_GOAL := lint
 
 .PHONY: env
 env:
 	uv venv
 
-.PHONY: lint
-lint:
-	uv run pre-commit run --all-files
-
 .PHONY: create-requirements
 create-requirements:
 	uv pip compile --generate-hashes pyproject.toml > requirements.txt
 
+.PHONY: lint
+lint: create-requirements
+	pre-commit run --all-files
+
 .PHONY: test
 test:
-	uv run pytest -vs tests/
+	pytest -vs tests/
 
 .PHONY: test-and-fail
 test-and-fail:
-	uv run pytest -vsx tests/
+	pytest -vsx tests/
 
 .PHONY: run
 run:
-	uv run python -m project
+	python -m project

README.md

@@ -27,7 +27,7 @@ lifting for a python project so that people can hit the ground running with thei
 
 ## Standard Commands
 - `make create-requirements`: Creates and/or updates the `requirements.txt` file.
-- `make env`: Creates or activates a `uv` virtual environment.
+- `make env`: Creates a `uv` virtual environment.
 - `make lint`: Runs `pre-commit`.
 - `make run`: Runs the `main` function in the `project` folder.
 - `make test`: Runs test cases in the `tests` directory.