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zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

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zUMIs_edit

This is an adapted version of zUMIs.

We added the following changes:

  • fixed a small bug for the edge case where there are no internal reads
  • adapted the STAR-2pass mode such that we keep the SJ.out.tab files from the first STAR pass

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zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

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  • R 67.1%
  • Perl 23.2%
  • Shell 6.0%
  • Python 3.7%