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Prepare for DOID using new OMIMPS prefix #1

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Prepare for DOID using new OMIMPS prefix #1

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5 changes: 5 additions & 0 deletions loadTerms.py
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Original file line number Diff line number Diff line change
Expand Up @@ -768,6 +768,11 @@ def addAccID(self,
else:
xrefs = prefixPart.split(':')
findLDB = xrefs[0]
if findLDB == 'OMIMPS':
# Prepare for DOID to apply proper prefixes for OMIM Phenotype series terms
# See: https://github.com/DiseaseOntology/HumanDiseaseOntology/pull/968
findLDB = 'OMIM:PS'

results = db.sql('''select _LogicalDB_key from ACC_LogicalDB where name = '%s' ''' % (findLDB), 'auto')
if len(results) > 0:
useLogicalDBkey = results[0]['_LogicalDB_key']
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