Further CI improvements

.github/workflows/ci.yml

@@ -115,6 +115,7 @@ jobs:
         BRANCH=${{ env.BRANCH }}
 
         cd covref
+        git pull origin coverage-reference
         git config user.name github-actions[bot]
         git config user.email "github-actions[bot]@users.noreply.github.com"
 
@@ -160,7 +161,7 @@ jobs:
           });
 
 
-  Sphinx-Pytest:
+  Pytest:
     runs-on: ubuntu-22.04
     strategy:
       fail-fast: false
@@ -209,13 +210,6 @@ jobs:
         safety check || true
       shell: micromamba-shell {0}
 
-    - name: sphinx documentation
-      run: |
-        micromamba install ipykernel
-        pip install .
-        make -C doc html SPHINXOPTS="-W --keep-going"
-      shell: micromamba-shell {0}
-
     - name: pytest
       run: |
         pytest

.github/workflows/master_update.yml

@@ -14,7 +14,7 @@ jobs:
     - name: Checkout
       uses: actions/checkout@v6
       with:
-        fetch-depth: 0
+        fetch-depth: 1
 
     - name: Substitute branch name in environment files
       run: |
@@ -39,20 +39,24 @@ jobs:
           pytest --cov=improver --cov-report=term --cov-report=html | tee coverage_output.txt; test ${PIPESTATUS[0]} -eq 0
       shell: micromamba-shell {0}
 
+    - name: Checkout reference coverage report
+      uses: actions/checkout@v6
+      with:
+        fetch-depth: 1
+        path: covref
+        ref: coverage-reference
+
     - name: Commit and push coverage report
       run: |
+        cd covref
         git config user.name github-actions[bot]
         git config user.email "github-actions[bot]@users.noreply.github.com"
 
-        git worktree add /tmp/coverage-ref coverage-reference
-
-        rm -rf /tmp/coverage-ref/master/
-        mkdir /tmp/coverage-ref/master/
-
-        cp coverage_output.txt /tmp/coverage-ref/master/.
-        cp -r htmlcov/ /tmp/coverage-ref/master/.
+        rm -rf master/
+        mkdir master/
 
-        cd /tmp/coverage-ref
+        cp ../coverage_output.txt master/.
+        cp -r ../htmlcov/ master/.
         git add -f master/
 
         # identify directories who's creation date is older than 14 days (excluding master/) and remove them

envs/latest.yml

@@ -36,10 +36,9 @@ dependencies:
   - pytest-cov
   - pytest-xdist
   - sphinx-autodoc-typehints
-  - sphinx-book-theme  
+  - sphinx-book-theme
   - sphinx-gallery
   - threadpoolctl
-  - pytest-xdist
   - pip
   - pip:
-    - git+https://github.com/metoppv/improver_example_data.git@${BRANCH_NAME}  
+    - git+https://github.com/metoppv/improver_example_data.git@${BRANCH_NAME}