feat(#114): Create OpenMRS Mediator

.github/workflows/test.yml

@@ -1,6 +1,6 @@
 name: Test
 
-on: [push, pull_request]
+on: [push]
 
 jobs:
   unit:

cht-config/Dockerfile

@@ -0,0 +1,20 @@
+FROM node:16-slim
+
+RUN apt update \
+    && apt install --no-install-recommends -y \
+      curl \
+      git \
+      python3-pip \
+      python3-setuptools \
+      python3-wheel \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/* \
+    && python3 -m pip install git+https://github.com/medic/pyxform.git@medic-conf-1.17#egg=pyxform-medic
+
+WORKDIR /scripts/cht-config
+
+COPY ./ ./
+
+RUN npm install --ignore-scripts && npm install -g --ignore-scripts cht-conf 
+
+CMD ["npm", "run", "deploy"]

cht-config/app_settings.json

@@ -442,31 +442,41 @@
     "mark_for_outbound": true
   },
   "outbound": {
-    "FHIR_patient": {
-      "relevant_to": "doc.type === 'person' && doc.role == 'patient'",
+    "patient": {
+      "relevant_to": "doc.type === 'person' && doc.patient_id && doc.role === 'patient'",
       "destination": {
         "base_url": "http://openhim-core:5001",
-        "path": "/mediator/patient",
+        "path": "/mediator/cht/patient",
         "auth": {
           "type": "basic",
           "username": "interop-client",
           "password_key": "openhim1"
         }
       },
       "mapping": {
-        "resourceType": {
-          "expr": "'Patient'"
-        },
-        "identifier": {
-          "expr": "[{ \"system\": \"cht\", \"use\": \"official\", \"value\": doc._id }]",
-          "optional": false
-        },
-        "name": {
-          "expr": "[ { \"use\":\"official\", \"family\": doc.name , \"given\": [ doc.short_name ] } ]",
-          "optional": false
-        },
-        "gender": "doc.sex",
-        "birthDate": "doc.date_of_birth"
+        "doc._id": "doc._id",
+        "doc.name": "doc.name",
+        "doc.phone": "doc.phone",
+        "doc.date_of_birth": "doc.date_of_birth",
+        "doc.sex": "doc.sex",
+        "doc.patient_id": "doc.patient_id"
+      }
+    },
+    "patient_id": {
+      "relevant_to": "doc.type === 'data_record' && doc.form === 'OPENMRS_PATIENT'",
+      "destination": {
+        "base_url": "http://openhim-core:5001",
+        "path": "/mediator/cht/patient_ids",
+        "auth": {
+          "type": "basic",
+          "username": "interop-client",
+          "password_key": "openhim1"
+        }
+      },
+      "mapping": {
+        "doc._id": "doc._id",
+        "doc.patient_id": "doc.patient_id",
+        "doc.external_id": "doc.fields.external_id"
       }
     },
     "FHIR_practitioner": {
@@ -541,6 +551,37 @@
           "expr": "[ { \"type\": [ { \"text\": \"Community health worker\" } ] } ]"
         }
       }
+    },
+    "openmrs_height_weight": {
+      "relevant_to": "doc.type === 'data_record' && doc.form === 'HEIGHT_WEIGHT'",
+      "destination": {
+        "base_url": "http://openhim-core:5001",
+        "path": "/mediator/cht/encounter",
+        "auth": {
+          "type": "basic",
+          "username": "interop-client",
+          "password_key": "openhim1"
+        }
+      },
+      "mapping": {
+        "id": "doc._id",
+        "patient_uuid": "doc.fields.patient_uuid",
+        "reported_date": "doc.reported_date",
+        "observations.0.valueQuantity.value": "doc.fields.height",
+        "observations.0.valueQuantity.unit": {
+          "expr": "\"cm\""
+        },
+        "observations.0.code": {
+          "expr": "\"5090AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA\""
+        },
+        "observations.1.valueQuantity.value": "doc.fields.weight",
+        "observations.1.valueQuantity.unit": {
+          "expr": "\"kg\""
+        },
+        "observations.1.code": {
+          "expr": "\"5089AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA\""
+        }
+      }
     }
   },
   "forms": {
@@ -570,6 +611,173 @@
         },
         "set_task": true
       }
+    },
+    "HEIGHT_WEIGHT": {
+      "meta": {
+        "code": "height_weight",
+        "translation_key": "forms.openmrs_height_weight.title",
+        "icon": "medic-person"
+      },
+      "fields": {
+        "patient_uuid": {
+          "labels": {
+            "tiny": {
+              "en": "ID"
+            },
+            "short": {
+              "translation_key": "patient_id"
+            }
+          },
+          "position": 0,
+          "type": "string",
+          "length": [
+            1,
+            13
+          ],
+          "required": true
+        },
+        "height": {
+          "labels": {
+            "short": {
+              "en": "Heght in cm"
+            }
+          },
+          "position": 1,
+          "type": "integer",
+          "required": true
+        },
+        "weight": {
+          "labels": {
+            "short": {
+              "en": "Weight in kg"
+            }
+          },
+          "position": 2,
+          "type": "integer",
+          "required": true
+        }
+      },
+      "public_form": true
+    },
+    "OPENMRS_INCOMING": {
+      "meta": {
+        "code": "openmrs_incoming",
+        "translation_key": "forms.openmrs_height_weight.title",
+        "icon": "medic-person"
+      },
+      "fields": {
+        "5090AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA": {
+          "labels": {
+            "short": {
+              "en": "Heght in cm"
+            }
+          },
+          "position": 0,
+          "type": "integer",
+          "required": true
+        },
+        "5089AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA": {
+          "labels": {
+            "short": {
+              "en": "Weight in kg"
+            }
+          },
+          "position": 1,
+          "type": "integer",
+          "required": true
+        }
+      },
+      "public_form": true
+    },
+    "OPENMRS_PATIENT": {
+      "meta": {
+        "code": "openmrs_patient",
+        "translation_key": "forms.n.title",
+        "icon": "medic-person"
+      },
+      "fields": {
+        "age_in_days": {
+          "labels": {
+            "tiny": {
+              "en": "Age in Days"
+            },
+            "short": {
+              "en": "Age in Days"
+            }
+          },
+          "position": 0,
+          "type": "integer",
+          "required": true
+        },
+        "patient_name": {
+          "labels": {
+            "tiny": {
+              "en": "patient_name"
+            },
+            "short": {
+              "en": "Patient Name"
+            }
+          },
+          "position": 1,
+          "type": "string",
+          "length": [
+            1,
+            40
+          ],
+          "required": true
+        },
+        "phone_number": {
+          "labels": {
+            "tiny": {
+              "en": "patient phone"
+            },
+            "short": {
+              "en": "patient Phone"
+            }
+          },
+          "position": 2,
+          "flags":{
+            "allow_duplicate": false
+          },
+          "type": "phone_number",
+          "required": true
+        },
+        "location_id": {
+          "labels": {
+            "tiny": {
+              "en": "location_id"
+            },
+            "short": {
+              "en": "location_id"
+            }
+          },
+          "position": 3,
+          "type": "string",
+          "length": [
+            1,
+            60
+          ],
+          "required": true
+        },
+        "external_id": {
+          "labels": {
+            "tiny": {
+              "en": "OpenMRS ID"
+            },
+            "short": {
+              "en": "OpenMRS ID"
+            }
+          },
+          "position": 4,
+          "type": "string",
+          "length": [
+            1,
+            60
+          ],
+          "required": true
+        }
+      },
+      "public_form": true
     }
   }
-}
+}

cht-config/package.json

@@ -13,7 +13,7 @@
     "test-targets": "npm run eslint && TZ=Africa/Nairobi mocha --reporter progress test/targets/*.spec.js --timeout 10000",
     "test-contact-summary": "npm run eslint && TZ=Africa/Nairobi mocha --reporter progress test/contact-summary/*.spec.js --timeout 10000",
     "test-unit": "TZ=Africa/Nairobi mocha --recursive --reporter spec test --timeout 20000",
-    "deploy": "wait-on http://api:5988/ && sleep 100 && sh ./script.sh"
+    "deploy": "wait-on http://api:5988/ && sh ./script.sh"
   },
   "devDependencies": {
     "chai": "^4.2.0",

configurator/Dockerfile

@@ -1,23 +1,12 @@
-FROM node:16-alpine
-
-RUN apk add g++ make py3-pip git curl chromium
+FROM node:22-alpine
 
 WORKDIR /scripts/configurator
 
-COPY ./configurator ./
+COPY ./package.json ./package.json
+COPY ./package-lock.json ./package-lock.json
 
 RUN npm install
 
-WORKDIR /scripts/cht-config
-
-COPY ../cht-config ./
-
-RUN npm install && npm install -g cht-conf && python -m pip install git+https://github.com/medic/pyxform.git@medic-conf-1.17#egg=pyxform-medic
-
-WORKDIR /scripts
-
-RUN echo "cd /scripts/configurator && npm run configure && cd /scripts/cht-config && npm run deploy && exit 0" > ./startup.sh
-
-RUN chmod +x ./startup.sh
+COPY ./ ./
 
-CMD ["sh", "./startup.sh"]
+CMD ["npm", "run", "configure"]

configurator/config/index.js

@@ -9,11 +9,23 @@ const OPENHIM_API_USERNAME =
 const OPENHIM_CLIENT_PASSWORD = process.env.OPENHIM_CLIENT_PASSWORD || 'interop-password';
 const OPENHIM_USER_PASSWORD = process.env.OPENHIM_USER_PASSWORD || 'interop-password';
 
+const OPENMRS_HOST = process.env.OPENMRS_HOST;
+const OPENMRS_PORT = process.env.OPENMRS_PORT || 8080;
+const OPENMRS_USERNAME = process.env.OPENMRS_USERNAME;
+const OPENMRS_PASSWORD = process.env.OPENMRS_PASSWORD;
+const OPENMRS_PROTOCOL = process.env.OPENMRS_PROTOCOL || 'http';
+
 module.exports = {
   OPENHIM_API_HOSTNAME,
   OPENHIM_API_PASSWORD,
   OPENHIM_API_PORT,
   OPENHIM_API_USERNAME,
   OPENHIM_CLIENT_PASSWORD,
-  OPENHIM_USER_PASSWORD
+  OPENHIM_USER_PASSWORD,
+
+  OPENMRS_HOST,
+  OPENMRS_PORT,
+  OPENMRS_USERNAME,
+  OPENMRS_PASSWORD,
+  OPENMRS_PROTOCOL
 };

configurator/env.template

@@ -4,3 +4,7 @@ OPENHIM_PASSWORD = 'openhim-password';
 OPENHIM_USERNAME = 'root@openhim.org';
 OPENHIM_CLIENT_PASSWORD = 'interop-password';
 OPENHIM_USER_PASSWORD = 'interop-password';
+
+OPENMRS_HOST='openmrs'
+OPENMRS_PASSWORD='Admin123'
+OPENMRS_USERNAME='admin'