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mdkabir1/README.md

Hi there

I'm Muhammad Kabir

πŸŽ“ Associate Researcher in Bioinformatics & Machine Learning
πŸ“ Lund, Sweden
🏫 Lund University – Biomedical Center (BMC)


πŸš€ About Me

I am a Associate Researcher working at the intersection of machine learning, bioinformatics, and computational biology.

My research focuses on developing advanced AI-driven methods to analyze complex biological data, particularly for:

  • Disease-causing genetic variation analysis
  • Protein and peptide prediction
  • Precision medicine applications

I have a strong background in statistical machine learning, deep learning, and evolutionary computation, with a consistent track record of peer-reviewed publications and computational tool development.

πŸ”¬ I enjoy building theoretically sound and scalable ML models that solve real-world biological problems.

πŸ“« Email: Muhammad.kabir@med.lu.se


πŸ”— Connect


🧠 Research Interests

  • Bioinformatics & Computational Biology
  • Machine Learning / Deep Learning
  • Genetic Variations & Disease Prediction
  • Protein & Peptide Prediction
  • Bioimaging & Medical Image Analysis

πŸ› οΈ Skills & Tools


πŸ“Œ Core Expertise

  • Machine Learning & Deep Learning for Biological Data
  • Sequence-based Prediction Models
  • Feature Engineering & Representation Learning
  • Ensemble & Stacking Methods
  • Genetic Variant Classification
  • High-dimensional Biological Data Analysis

πŸ”¬ Selected Work

πŸ”Ή PON-P3 – Predictor for pathogenicity of amino acid substitutions
🌐 https://structure-next.med.lu.se/PON-P3/

πŸ”Ή Deep learning models for:

  • Antimicrobial peptides
  • Tumor-homing peptides
  • Promoter and enhancer prediction

πŸ”Ή Multiple ML-based frameworks for protein and genomic sequence analysis


πŸŽ“ Academic Experience

Associate Researcher
Lund University, Sweden (2026 – Present)

Postdoctoral Researcher
Lund University, Sweden (2023 – 2026)

Assistant Professor
University of Management and Technology, Pakistan (2020 – 2023)


⭐ Open to research collaborations, academic opportunities, and interdisciplinary projects

Popular repositories Loading

  1. webpage webpage Public

    HTML 1

  2. PROCABLES PROCABLES Public

    Python 1

  3. deep-learning deep-learning Public

    Forked from udacity/deep-learning

    Repo for the Deep Learning Nanodegree Foundations program.

    Jupyter Notebook 1

  4. iDeepS iDeepS Public

    Forked from xypan1232/iDeepS

    inferring sequence-structure motifs using deep learning

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  5. LM-LSTM-CRF LM-LSTM-CRF Public

    Forked from zhangmeishan/LM-LSTM-CRF

    Empower Sequence Labeling with Task-Aware Language Model

    Python

  6. mdkabir.github.io mdkabir.github.io Public

    CSS