Sourcery refactored master branch by sourcery-ai[bot] · Pull Request #3 · matthewtownson/aotools

sourcery-ai · 2023-07-19T08:26:51Z

Branch master refactored by Sourcery.

If you're happy with these changes, merge this Pull Request using the Squash and merge strategy.

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sourcery-ai

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sourcery-ai · 2023-07-19T08:26:53Z

versioneer.py

-            print("Warning: build in %s is using versioneer.py from %s"
-                  % (os.path.dirname(me), versioneer_py))
+            print(
+                f"Warning: build in {os.path.dirname(me)} is using versioneer.py from {versioneer_py}"
+            )


Function get_root refactored with the following changes:

Replace interpolated string formatting with f-string (replace-interpolation-with-fstring)

sourcery-ai · 2023-07-19T08:26:54Z

versioneer.py

-                print("unable to run %s" % dispcmd)
+                print(f"unable to run {dispcmd}")
                print(e)
            return None, None
    else:
        if verbose:
-            print("unable to find command, tried %s" % (commands,))
+            print(f"unable to find command, tried {commands}")
        return None, None
    stdout = p.communicate()[0].strip()
    if sys.version_info[0] >= 3:
        stdout = stdout.decode()
    if p.returncode != 0:
        if verbose:
-            print("unable to run %s (error)" % dispcmd)
-            print("stdout was %s" % stdout)
+            print(f"unable to run {dispcmd} (error)")
+            print(f"stdout was {stdout}")


Function run_command refactored with the following changes:

Replace interpolated string formatting with f-string [×4] (replace-interpolation-with-fstring)

sourcery-ai · 2023-07-19T08:26:54Z

versioneer.py

-        f = open(versionfile_abs, "r")
-        for line in f.readlines():
-            if line.strip().startswith("git_refnames ="):
-                mo = re.search(r'=\s*"(.*)"', line)
-                if mo:
-                    keywords["refnames"] = mo.group(1)
-            if line.strip().startswith("git_full ="):
-                mo = re.search(r'=\s*"(.*)"', line)
-                if mo:
-                    keywords["full"] = mo.group(1)
-            if line.strip().startswith("git_date ="):
-                mo = re.search(r'=\s*"(.*)"', line)
-                if mo:
-                    keywords["date"] = mo.group(1)
-        f.close()
+        with open(versionfile_abs, "r") as f:
+            for line in f:
+                if line.strip().startswith("git_refnames ="):
+                    if mo := re.search(r'=\s*"(.*)"', line):
+                        keywords["refnames"] = mo[1]
+                if line.strip().startswith("git_full ="):
+                    if mo := re.search(r'=\s*"(.*)"', line):
+                        keywords["full"] = mo[1]
+                if line.strip().startswith("git_date ="):
+                    if mo := re.search(r'=\s*"(.*)"', line):
+                        keywords["date"] = mo[1]


Function git_get_keywords refactored with the following changes:

Use with when opening file to ensure closure (ensure-file-closed)

Iterate over files directly rather than using readlines() (use-file-iterator)

Use named expression to simplify assignment and conditional [×3] (use-named-expression)

Replace m.group(x) with m[x] for re.Match objects [×3] (use-getitem-for-re-match-groups)

sourcery-ai · 2023-07-19T08:26:54Z

versioneer.py

-    refs = set([r.strip() for r in refnames.strip("()").split(",")])
+    refs = {r.strip() for r in refnames.strip("()").split(",")}
    # starting in git-1.8.3, tags are listed as "tag: foo-1.0" instead of
    # just "foo-1.0". If we see a "tag: " prefix, prefer those.
    TAG = "tag: "
-    tags = set([r[len(TAG):] for r in refs if r.startswith(TAG)])
+    tags = {r[len(TAG):] for r in refs if r.startswith(TAG)}


Function git_versions_from_keywords refactored with the following changes:

Replace list(), dict() or set() with comprehension [×3] (collection-builtin-to-comprehension)

Replace unneeded comprehension with generator [×3] (comprehension-to-generator)

Replace interpolated string formatting with f-string [×3] (replace-interpolation-with-fstring)

sourcery-ai · 2023-07-19T08:26:54Z

versioneer.py

-    GITS = ["git"]
-    if sys.platform == "win32":
-        GITS = ["git.cmd", "git.exe"]
-
+    GITS = ["git.cmd", "git.exe"] if sys.platform == "win32" else ["git"]
    out, rc = run_command(GITS, ["rev-parse", "--git-dir"], cwd=root,
                          hide_stderr=True)
    if rc != 0:
        if verbose:
-            print("Directory %s not under git control" % root)
+            print(f"Directory {root} not under git control")
        raise NotThisMethod("'git rev-parse --git-dir' returned error")

    # if there is a tag matching tag_prefix, this yields TAG-NUM-gHEX[-dirty]
    # if there isn't one, this yields HEX[-dirty] (no NUM)
-    describe_out, rc = run_command(GITS, ["describe", "--tags", "--dirty",
-                                          "--always", "--long",
-                                          "--match", "%s*" % tag_prefix],
-                                   cwd=root)
+    describe_out, rc = run_command(
+        GITS,
+        [
+            "describe",
+            "--tags",
+            "--dirty",
+            "--always",
+            "--long",
+            "--match",
+            f"{tag_prefix}*",
+        ],
+        cwd=root,
+    )


Function git_pieces_from_vcs refactored with the following changes:

Move setting of default value for variable into else branch (introduce-default-else)

Replace interpolated string formatting with f-string [×5] (replace-interpolation-with-fstring)

Merge dictionary assignment with declaration [×3] (merge-dict-assign)

Replace m.group(x) with m[x] for re.Match objects [×3] (use-getitem-for-re-match-groups)

Inline variable that is only used once (inline-variable)

Replace if statement with if expression (assign-if-exp)

This removes the following comments ( why? ):

# maybe improved later

sourcery-ai · 2023-07-19T08:26:56Z

versioneer.py

-    cmds = {}
-
    # we add "version" to both distutils and setuptools
    from distutils.core import Command

+


Function get_cmdclass refactored with the following changes:

Move assignment closer to its usage within a block [×2] (move-assign-in-block)

Replace interpolated string formatting with f-string [×9] (replace-interpolation-with-fstring)

Merge dictionary assignment with declaration [×2] (merge-dict-assign)

This removes the following comments ( why? ):

# "version": versioneer.get_version().split("+", 1)[0], # FILEVERSION # nczeczulin reports that py2exe won't like the pep440-style string # as FILEVERSION, but it can be used for PRODUCTVERSION, e.g. # ... # setup(console=[{ # "product_version": versioneer.get_version(),

sourcery-ai · 2023-07-19T08:26:56Z

versioneer.py

-    print(" creating %s" % cfg.versionfile_source)
+    print(f" creating {cfg.versionfile_source}")


Function do_setup refactored with the following changes:

Replace interpolated string formatting with f-string [×5] (replace-interpolation-with-fstring)

sourcery-ai · 2023-07-19T08:26:56Z

versioneer.py

-        for line in f.readlines():
+        for line in f:


Function scan_setup_py refactored with the following changes:

Iterate over files directly rather than using readlines() (use-file-iterator)

sourcery-ai · 2023-07-19T08:26:56Z

aotools/_version.py

    git_date = "$Format:%ci$"
-    keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}
-    return keywords
+    return {"refnames": git_refnames, "full": git_full, "date": git_date}


Function get_keywords refactored with the following changes:

Inline variable that is immediately returned (inline-immediately-returned-variable)

sourcery-ai · 2023-07-19T08:26:56Z

aotools/_version.py

-                print("unable to run %s" % dispcmd)
+                print(f"unable to run {dispcmd}")
                print(e)
            return None, None
    else:
        if verbose:
-            print("unable to find command, tried %s" % (commands,))
+            print(f"unable to find command, tried {commands}")
        return None, None
    stdout = p.communicate()[0].strip()
    if sys.version_info[0] >= 3:
        stdout = stdout.decode()
    if p.returncode != 0:
        if verbose:
-            print("unable to run %s (error)" % dispcmd)
-            print("stdout was %s" % stdout)
+            print(f"unable to run {dispcmd} (error)")
+            print(f"stdout was {stdout}")


Function run_command refactored with the following changes:

Replace interpolated string formatting with f-string [×4] (replace-interpolation-with-fstring)

sourcery-ai · 2023-07-19T08:27:00Z

aotools/_version.py

-    for i in range(3):
+    for _ in range(3):
        dirname = os.path.basename(root)
        if dirname.startswith(parentdir_prefix):
            return {"version": dirname[len(parentdir_prefix):],
                    "full-revisionid": None,
                    "dirty": False, "error": None, "date": None}
-        else:
-            rootdirs.append(root)
-            root = os.path.dirname(root)  # up a level
+        rootdirs.append(root)
+        root = os.path.dirname(root)  # up a level

    if verbose:
-        print("Tried directories %s but none started with prefix %s" %
-              (str(rootdirs), parentdir_prefix))
+        print(
+            f"Tried directories {rootdirs} but none started with prefix {parentdir_prefix}"
+        )


Function versions_from_parentdir refactored with the following changes:

Replace unused for index with underscore (for-index-underscore)

Replace interpolated string formatting with f-string (replace-interpolation-with-fstring)

Remove unnecessary else after guard condition (remove-unnecessary-else)

Remove unnecessary calls to str() from formatted values in f-strings (remove-str-from-fstring)

sourcery-ai · 2023-07-19T08:27:00Z

aotools/_version.py

-        f = open(versionfile_abs, "r")
-        for line in f.readlines():
-            if line.strip().startswith("git_refnames ="):
-                mo = re.search(r'=\s*"(.*)"', line)
-                if mo:
-                    keywords["refnames"] = mo.group(1)
-            if line.strip().startswith("git_full ="):
-                mo = re.search(r'=\s*"(.*)"', line)
-                if mo:
-                    keywords["full"] = mo.group(1)
-            if line.strip().startswith("git_date ="):
-                mo = re.search(r'=\s*"(.*)"', line)
-                if mo:
-                    keywords["date"] = mo.group(1)
-        f.close()
+        with open(versionfile_abs, "r") as f:
+            for line in f:
+                if line.strip().startswith("git_refnames ="):
+                    if mo := re.search(r'=\s*"(.*)"', line):
+                        keywords["refnames"] = mo[1]
+                if line.strip().startswith("git_full ="):
+                    if mo := re.search(r'=\s*"(.*)"', line):
+                        keywords["full"] = mo[1]
+                if line.strip().startswith("git_date ="):
+                    if mo := re.search(r'=\s*"(.*)"', line):
+                        keywords["date"] = mo[1]


Function git_get_keywords refactored with the following changes:

Use with when opening file to ensure closure (ensure-file-closed)

Iterate over files directly rather than using readlines() (use-file-iterator)

Use named expression to simplify assignment and conditional [×3] (use-named-expression)

Replace m.group(x) with m[x] for re.Match objects [×3] (use-getitem-for-re-match-groups)

sourcery-ai · 2023-07-19T08:27:00Z

aotools/_version.py

-    refs = set([r.strip() for r in refnames.strip("()").split(",")])
+    refs = {r.strip() for r in refnames.strip("()").split(",")}
    # starting in git-1.8.3, tags are listed as "tag: foo-1.0" instead of
    # just "foo-1.0". If we see a "tag: " prefix, prefer those.
    TAG = "tag: "
-    tags = set([r[len(TAG):] for r in refs if r.startswith(TAG)])
+    tags = {r[len(TAG):] for r in refs if r.startswith(TAG)}


Function git_versions_from_keywords refactored with the following changes:

Replace list(), dict() or set() with comprehension [×3] (collection-builtin-to-comprehension)

Replace unneeded comprehension with generator [×3] (comprehension-to-generator)

Replace interpolated string formatting with f-string [×3] (replace-interpolation-with-fstring)

sourcery-ai · 2023-07-19T08:27:00Z

aotools/_version.py

-    GITS = ["git"]
-    if sys.platform == "win32":
-        GITS = ["git.cmd", "git.exe"]
-
+    GITS = ["git.cmd", "git.exe"] if sys.platform == "win32" else ["git"]
    out, rc = run_command(GITS, ["rev-parse", "--git-dir"], cwd=root,
                          hide_stderr=True)
    if rc != 0:
        if verbose:
-            print("Directory %s not under git control" % root)
+            print(f"Directory {root} not under git control")
        raise NotThisMethod("'git rev-parse --git-dir' returned error")

    # if there is a tag matching tag_prefix, this yields TAG-NUM-gHEX[-dirty]
    # if there isn't one, this yields HEX[-dirty] (no NUM)
-    describe_out, rc = run_command(GITS, ["describe", "--tags", "--dirty",
-                                          "--always", "--long",
-                                          "--match", "%s*" % tag_prefix],
-                                   cwd=root)
+    describe_out, rc = run_command(
+        GITS,
+        [
+            "describe",
+            "--tags",
+            "--dirty",
+            "--always",
+            "--long",
+            "--match",
+            f"{tag_prefix}*",
+        ],
+        cwd=root,
+    )


Function git_pieces_from_vcs refactored with the following changes:

Move setting of default value for variable into else branch (introduce-default-else)

Replace interpolated string formatting with f-string [×5] (replace-interpolation-with-fstring)

Merge dictionary assignment with declaration [×3] (merge-dict-assign)

Replace m.group(x) with m[x] for re.Match objects [×3] (use-getitem-for-re-match-groups)

Inline variable that is only used once (inline-variable)

Replace if statement with if expression (assign-if-exp)

This removes the following comments ( why? ):

# maybe improved later

sourcery-ai · 2023-07-19T08:27:01Z

aotools/_version.py

-    if "+" in pieces.get("closest-tag", ""):
-        return "."
-    return "+"
+    return "." if "+" in pieces.get("closest-tag", "") else "+"


Function plus_or_dot refactored with the following changes:

Lift code into else after jump in control flow (reintroduce-else)

Replace if statement with if expression (assign-if-exp)

sourcery-ai · 2023-07-19T08:27:02Z

aotools/fouriertransform.py

-    DATA = numpy.fft.ifftshift(
-            numpy.fft.irfft(
-                    numpy.fft.ifftshift(data, axes=(-1))),
-            axes=(-1)) * data.shape[-1] * delta_f
-
-    return DATA
+    return (
+        numpy.fft.ifftshift(
+            numpy.fft.irfft(numpy.fft.ifftshift(data, axes=(-1))), axes=(-1)
+        )
+        * data.shape[-1]
+        * delta_f
+    )


Function irft refactored with the following changes:

Inline variable that is immediately returned (inline-immediately-returned-variable)

sourcery-ai · 2023-07-19T08:27:02Z

aotools/fouriertransform.py

-    DATA = numpy.fft.fftshift(
-            numpy.fft.rfft2(
-                    numpy.fft.fftshift(data, axes=(-1,-2))
-                    ), axes=(-1,-2)
-            )*delta**2
-
-    return DATA
+    return (
+        numpy.fft.fftshift(
+            numpy.fft.rfft2(numpy.fft.fftshift(data, axes=(-1, -2))),
+            axes=(-1, -2),
+        )
+        * delta**2
+    )


Function rft2 refactored with the following changes:

Inline variable that is immediately returned (inline-immediately-returned-variable)

sourcery-ai · 2023-07-19T08:27:03Z

aotools/fouriertransform.py

-    DATA = numpy.fft.ifftshift(
+    return (
+        numpy.fft.ifftshift(
            numpy.fft.irfft2(
-                    numpy.fft.ifftshift(data, axes=(-1,-2)), 
-                    axes=(-1,-2)
-                    ),
-            axes=(-1,-2)) * (N * delta_f)**2
-    return DATA
+                numpy.fft.ifftshift(data, axes=(-1, -2)), axes=(-1, -2)
+            ),
+            axes=(-1, -2),
+        )
+        * (N * delta_f) ** 2
+    )


Function irft2 refactored with the following changes:

Inline variable that is immediately returned (inline-immediately-returned-variable)

sourcery-ai · 2023-07-19T08:27:03Z

aotools/interpolation.py


    #If array is complex must do 2 interpolations
-    if array.dtype==numpy.complex64 or array.dtype==numpy.complex128:
+    if array.dtype in [numpy.complex64, numpy.complex128]:


Function zoom refactored with the following changes:

Replace multiple comparisons of same variable with in operator (merge-comparisons)

sourcery-ai · 2023-07-19T08:27:03Z

aotools/interpolation.py

-    if array.dtype==numpy.complex64 or array.dtype==numpy.complex128:
+    if array.dtype in [numpy.complex64, numpy.complex128]:
        realInterpObj = RectBivariateSpline(   
                numpy.arange(array.shape[0]), numpy.arange(array.shape[1]), 
                array.real, kx=order, ky=order)
        imagInterpObj = RectBivariateSpline(   
                numpy.arange(array.shape[0]), numpy.arange(array.shape[1]), 
                array.imag, kx=order, ky=order)
-                         
+
        return (realInterpObj(coordsY,coordsX)
                            + 1j*imagInterpObj(coordsY,coordsX))
-            
+


Function zoom_rbs refactored with the following changes:

Replace multiple comparisons of same variable with in operator (merge-comparisons)

sourcery-ai · 2023-07-19T08:27:08Z

aotools/interpolation.py

    '''
    shape = numpy.array( data.shape )
-    
+


Function binImgs refactored with the following changes:

Hoist repeated code outside conditional statement (hoist-statement-from-if)

sourcery-ai · 2023-07-19T08:27:08Z

aotools/opticalpropagation.py

-    #Compute propagated field
-    outputComplexAmp = Q3 * fouriertransform.ift2(
-                    Q2 * fouriertransform.ft2(Q1 * inputComplexAmp/mag,inputSpacing), df1)
-    return outputComplexAmp
+    return Q3 * fouriertransform.ift2(
+        Q2 * fouriertransform.ft2(Q1 * inputComplexAmp / mag, inputSpacing),
+        df1,
+    )


Function angularSpectrum refactored with the following changes:

Inline variable that is immediately returned (inline-immediately-returned-variable)

This removes the following comments ( why? ):

#Compute propagated field

sourcery-ai · 2023-07-19T08:27:09Z

aotools/opticalpropagation.py

-    Uout = A*B*C
-
-    return Uout
+    return A*B*C


Function oneStepFresnel refactored with the following changes:

Inline variable that is immediately returned (inline-immediately-returned-variable)

sourcery-ai · 2023-07-19T08:27:09Z

aotools/opticalpropagation.py

-    Uout = A*B*C
-
-    return Uout
+    return A*B*C


Function twoStepFresnel refactored with the following changes:

Inline variable that is immediately returned (inline-immediately-returned-variable)

sourcery-ai · 2023-07-19T08:27:09Z

aotools/opticalpropagation.py

+        numpy.exp(1j * k / (2 * f) * (x2**2 + y2**2))
+        / (1j * wvl * f)
+        * fouriertransform.ft2(Uin, d1)
+    )


Function lensAgainst refactored with the following changes:

Inline variable that is immediately returned (inline-immediately-returned-variable)

This removes the following comments ( why? ):

#phase factor inside cancelled by the phase of the lens #Evaluate the Fresnel-Kirchoff integral but with the quadratic

sourcery-ai · 2023-07-19T08:27:12Z

aotools/functions/karhunenLoeve.py

-    phi = np.transpose(rebin(np.reshape(phi1, (npp, 1)), (npp, nr)))
-    return phi
+    return np.transpose(rebin(np.reshape(phi1, (npp, 1)), (npp, nr)))


Function polang refactored with the following changes:

Inline variable that is immediately returned (inline-immediately-returned-variable)

sourcery-ai · 2023-07-19T08:27:12Z

aotools/functions/karhunenLoeve.py

-    geom = {'px': px, 'py': py, 'cr': cr, 'cp': cp,
-            'pincx': pincx, 'pincy': pincy, 'pincw': pincw,
-            'ap': ap, 'ncp': ncp, 'ncmar': ncmar}
-
-    return geom
+    return {
+        'px': px,
+        'py': py,
+        'cr': cr,
+        'cp': cp,
+        'pincx': pincx,
+        'pincy': pincy,
+        'pincw': pincw,
+        'ap': ap,
+        'ncp': ncp,
+        'ncmar': ncmar,
+    }


Function pcgeom refactored with the following changes:

Inline variable that is immediately returned (inline-immediately-returned-variable)

sourcery-ai · 2023-07-19T08:27:12Z

aotools/functions/karhunenLoeve.py

-    assert (stf == 'kolmogorov') or (stf == 'kolstf') or (stf == 'vonKarman') \
-        or (stf == 'karman') or (stf == 'vk')
+    assert stf in ['kolmogorov', 'kolstf', 'vonKarman', 'karman', 'vk']


Function make_kl refactored with the following changes:

Replace multiple comparisons of same variable with in operator (merge-comparisons)

sourcery-ai · 2023-07-19T08:27:12Z

aotools/functions/zernike.py

-    else:
-        if m > 0: # j is even
-            Z = numpy.sqrt(2*(n+1)) * zernikeRadialFunc(n, m, R) * numpy.cos((m*theta)+rot)
-        else:   #i is odd
-            m = abs(m)
-            Z = numpy.sqrt(2*(n+1)) * zernikeRadialFunc(n, m, R) * numpy.sin((m*theta)+rot)
+    elif m > 0: # j is even
+        Z = numpy.sqrt(2*(n+1)) * zernikeRadialFunc(n, m, R) * numpy.cos((m*theta)+rot)
+    else:   #i is odd
+        m = abs(m)
+        Z = numpy.sqrt(2*(n+1)) * zernikeRadialFunc(n, m, R) * numpy.sin((m*theta)+rot)


Function zernike_nm refactored with the following changes:

Merge else clause's nested if statement into elif (merge-else-if-into-elif)

sourcery-ai · 2023-07-19T08:27:12Z

aotools/functions/zernike.py

-        if j%2==0:
-            s=1
-        else:
-            s=-1
+        s = 1 if j%2==0 else -1


Function zernIndex refactored with the following changes:

Replace if statement with if expression (assign-if-exp)

'Refactored by Sourcery'

39ae2b4

sourcery-ai bot requested a review from matthewtownson July 19, 2023 08:26

sourcery-ai bot commented Jul 19, 2023

View reviewed changes

matthewtownson force-pushed the master branch from aa70c0a to b7c4ac4 Compare September 4, 2023 13:35

		print(" creating %s" % cfg.versionfile_source)
		print(f" creating {cfg.versionfile_source}")

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