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added 26 commits
May 28, 2014 17:45
… IDs instead of names to make it more consistent with other tree accepting programs
…onfusion about where things end up
…latter now distinguishes between cases in which an organism is not included in a cluster run and those in which it is but the genes arent in the same cluster. It makes the analysis a lot more useful.
…nd on the file given as input
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Bruno: Thanks for submitting the request. Have you been using this branch? My main concern with pulling it in is I don't remember how thoroughly I tested it (especially the database creation, the new gui stuff, and the orthomcl stuff). Matt |
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