Add MI metrics visibility across the app#3
Merged
marcoloco23 merged 1 commit intomainfrom Mar 1, 2026
Merged
Conversation
The app was computing MI (mutual information) metrics but not surfacing them to users. This change makes MI similarity data visible and actionable throughout the UI, enabling users to answer the core question: "How does genetic similarity compare to taxonomy?" Backend: - Add mi_norm and align_len to GraphEdge schema (was only distance) - Add shared_rank to NeighborOut (computed from lineage arrays) - MI network deduplication now preserves mi_norm and align_len - Neighbors endpoint batch-fetches lineage ranks for taxonomy coherence Frontend: - NeighborCard shows actual NMI% instead of misleading relative distance - Neighbor cards show shared taxonomic rank badge (genus/family/order) - Taxonomic coherence summary bar above neighbors section - Graph page MI stats panel (avg/median/range NMI, distribution buckets) - Sigma graph edge hover tooltip showing NMI%, distance, alignment cols - TypeScript types updated for new GraphEdge and NeighborOut fields Tests: 122 API tests + 86 frontend tests passing (5 new tests added) https://claude.ai/code/session_015FCj2G9CHpnsJqHcF3n8aw
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
The app was computing MI (mutual information) metrics but not surfacing
them to users. This change makes MI similarity data visible and
actionable throughout the UI, enabling users to answer the core
question: "How does genetic similarity compare to taxonomy?"
Backend:
Frontend:
Tests: 122 API tests + 86 frontend tests passing (5 new tests added)
https://claude.ai/code/session_015FCj2G9CHpnsJqHcF3n8aw