Spatial Transcriptome Deconvolution

This repository serves as an index of repositories for code to perform spatial transcriptome deconvolution.

Negative Binomial regression model

Here is the code for
Charting Tissue Expression Anatomy by Spatial Transcriptome Deconvolution
Jonas Maaskola, Ludvig Bergenstråhle, Aleksandra Jurek, José Fernández Navarro, Jens Lagergren, Joakim Lundeberg
doi: https://doi.org/10.1101/362624

Poisson regression model

Here is the code for
Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity
Emelie Berglund, Jonas Maaskola, Niklas Schultz, Stefanie Friedrich, Maja Marklund, Joseph Bergenstråhle, Firas Tarish, Anna Tanoglidi, Sanja Vickovic, Ludvig Larsson, Fredrik Salmén, Christoph Ogris, Karolina Wallenborg, Jens Lagergren, Patrik Ståhl, Erik Sonnhammer, Thomas Helleday, Joakim Lundeberg
Nature Communications, volume 9, Article number: 2419 (2018)