[DO NOT MERGE] CI tests #59
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Due to some issues with ADIOS2 segfaulting on some very large simulation data sets when running the new Rust based python light-up scripts, I needed to port those capabilities to run during the simulations. It was a fairly straight-forward port (still need to compile) as the Rust to C++ conversion was fairly simple... I still like the Rust version a bit more just as the code is nicer, and it works so well with python...
Will definitely need to actually iterate on things some more, but I needed to do lots of refactoring / fixing tons of bugs in the code :/ I really wanted to avoid having everything in the header file just as that complicates things but it turns out that once again that was the easiet thing to get things working again... Obviously this also required some additional changes elsewhere so that system_driver.hpp wasn't dragging everything from the lightup header into its header and then polluting other pieces of code. I will also probably need to convert more things from std::array and double[] to mfem::Vectors just to be able to move things over to the gpu.
Ran down a few bugs in the lattice calculations and find fiber calculations Also added all the stuff needed in the options.toml file. The sample direction aspect of things might still need to be fixed but tested it with y and z directions.
Refactored some of the code such that we can now work with v0.4.0 and also leverage a lot of new underlying code in ECMech to simplify a ton of our options / model set-up code.We can run any model supported by ECMech in it's cases without having to manually add the code in ExaConstit. The upside of this is that our compile times are now a lot faster and maintanence of the code is a lot simpler. The downsides are that users need to take advantage of the new shortcut key in the options file which has less than ideal naming conventions for models. Additionally, we needed to remove the ability to calculate and output the plastic deformation rate tensor as we currently don't have access to the slip system class in ECMech as we now make use of a base class.
Picked up a number of bug fixes I had in another local branch and migrated them over here to ensure they were captured. Next clang was throwing a bunch of warnings to me that seemed like the appropriate time to fix as well. Finally brought over an "experimental" feature we've been using for a lot of single crystal work to make it super simple to model uniaxial tension / compression in the z direction.
Overall mainly build system changes but there were some minor changes to update the RAJA forall execution type for sequential runs as the loop_exec type is deprecated in more modern RAJA versions.
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Debugging CI tests here so we don't pollute the commit history of the insitu_lightup branch....