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Use comma instead of tab character #138

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Use comma instead of tab character #138

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4 changes: 2 additions & 2 deletions loompy/bus_file.py
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Original file line number Diff line number Diff line change
Expand Up @@ -133,7 +133,7 @@ def load_sample_metadata(path: str, sample_id: str) -> Dict[str, str]:
else:
result = {}
with open(path) as f:
headers = [x.lower() for x in f.readline()[:-1].split("\t")]
headers = [x.lower() for x in f.readline()[:-1].split(",")]
if "sampleid" not in headers and 'name' not in headers:
raise ValueError("Required column 'SampleID' or 'Name' not found in sample metadata file")
if "sampleid" in headers:
Expand All @@ -142,7 +142,7 @@ def load_sample_metadata(path: str, sample_id: str) -> Dict[str, str]:
sample_metadata_key_idx = headers.index("name")
sample_found = False
for line in f:
items = line[:-1].split("\t")
items = line[:-1].split(",")
if len(items) > sample_metadata_key_idx and items[sample_metadata_key_idx] == sample_id:
for i, item in enumerate(items):
result[headers[i]] = item
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