change absolute path to option of main function#1

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shengqh wants to merge 8 commits intolinlabcode:masterfrom

Commits on Feb 7, 2017

change absolute path to option of main function
shengq1
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Commits on Feb 10, 2017

for refgeneid in activity file which not in the annotation database,
shengq1
committed
ignore the refseqid not in annotation database
shengq1
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Commits on Feb 13, 2017

bugfix
shengq1
committed
compatible with top gene less than user assigned value (or default
shengq1
committed

Commits on Jul 12, 2023