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bugfix for printing alignment#7

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brianjohnhaas wants to merge 1 commit intolibnano:masterfrom
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bugfix for printing alignment#7
brianjohnhaas wants to merge 1 commit intolibnano:masterfrom
brianjohnhaas:master

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Now making use of cigar strings that have more than one digit for the numeric length value.

The current version crashes on longer alignments. This seems to work well now.

…more than one digit for the numeric length value
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