Devel validation #8
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Addition of 'utils' function and a new POST_FATE function for habitat validation in RFate
Addition of new "Utils" function and a new POST_FATE function for habitat validation of a FATE simulation
With this update the function take only the extended map of the studied area as argument.
With this update the function uses the new restricted map of the area and extracts data from it.
Modification of the header with a new param
Correction of a small mistake in the header
Modification of the title
Addition of the new markdown files of the new habitat validation functions
Addition of the documentation (.html files) of the new habitat validation functions
Addition of the new habitat validation functions in the index of the website
Correction of mistakes in header
Correction of mistakes
Update of the function : addition of an habitat considered by the random forest model to generalized the function to any kind of environment
Small adjustment of the header
Small correction
Small correction
…ith the other functions of RFate package, and corrections in order to simplify the function workflow
…s, return, examples)
Merge branch 'master' into devel_validation # Conflicts: # DESCRIPTION # docs/reference/POST_FATE.graphic_mapPFG.html # docs/reference/POST_FATE.graphic_validationStatistics.html # docs/reference/POST_FATE.temporalEvolution.html # docs/reference/PRE_FATE.params_globalParameters.html # docs/reference/PRE_FATE.skeletonDirectory.html # docs/reference/PRE_FATE.speciesClustering_step1.html # docs/reference/PRE_FATE.speciesDistanceCombine.html # docs/reference/SAVE_FATE.step2_parameters.html # docs/reference/beta.pair.html # docs/reference/cluster.stats.html # docs/reference/designLHD.html # docs/reference/divLeinster.html # docs/reference/dot-createParams.html # docs/reference/dot-getELLIPSE.html # docs/reference/dot-loadPackage.html # docs/reference/dunn.html # docs/reference/ecospat.niche.overlap.html # docs/reference/index.html # src/libs/iostreams/src/zlib.o
…arameter in globalParam file to enable soil initialisation map
…ncluded in POST_FATE.validation)
Merge branch 'master' into devel_validation # Conflicts: # DESCRIPTION # NAMESPACE # docs/reference/FATE.html # docs/reference/POST_FATE.binaryMaps.html # docs/reference/POST_FATE.graphic_evolutionCoverage.html # docs/reference/POST_FATE.graphic_evolutionPixels.html # docs/reference/POST_FATE.graphic_evolutionStability.html # docs/reference/POST_FATE.graphic_mapPFG.html # docs/reference/POST_FATE.graphic_mapPFGvsHS.html # docs/reference/POST_FATE.graphics.html # docs/reference/POST_FATE.relativeAbund.html # docs/reference/POST_FATE.temporalEvolution.html # docs/reference/PRE_FATE.abundBraunBlanquet.html # docs/reference/PRE_FATE.params_PFGdispersal.html # docs/reference/PRE_FATE.params_PFGdisturbance.html # docs/reference/PRE_FATE.params_PFGdrought.html # docs/reference/PRE_FATE.params_PFGlight.html # docs/reference/PRE_FATE.params_PFGsoil.html # docs/reference/PRE_FATE.params_PFGsuccession.html # docs/reference/PRE_FATE.params_changingYears.html # docs/reference/PRE_FATE.params_multipleSet.html # docs/reference/PRE_FATE.params_savingYears.html # docs/reference/PRE_FATE.params_simulParameters.html # docs/reference/PRE_FATE.selectDominant.html # docs/reference/PRE_FATE.speciesClustering_step2.html # docs/reference/PRE_FATE.speciesClustering_step3.html # docs/reference/PRE_FATE.speciesDistance.html # docs/reference/PRE_FATE.speciesDistanceCombine.html # docs/reference/PRE_FATE.speciesDistanceOverlap.html # docs/reference/PRE_FATE.speciesDistanceTraits.html # docs/reference/RFATE.html # docs/reference/SAVE_FATE.step1_PFG.html # docs/reference/dot-adaptMaps.html # docs/reference/dot-getCutoff.html # docs/reference/dot-getOS.html # docs/reference/dot-getParam.html # docs/reference/dot-loadData.html # docs/reference/dot-scaleMaps.html # docs/reference/dot-setParam.html # docs/reference/dot-setPattern.html # docs/reference/dot-unzip_ALL.html # src/SuFate.cpp
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