Skip to content

improvements from running complex rnaseq and chipseq#327

Merged
daler merged 26 commits intov1.8rcfrom
complex-rnaseq
Apr 4, 2021
Merged

improvements from running complex rnaseq and chipseq#327
daler merged 26 commits intov1.8rcfrom
complex-rnaseq

Conversation

@daler
Copy link
Contributor

@daler daler commented Jan 4, 2021

This PR includes additional config files that can be used to run a full-sized RNA-seq and ChIP-seq experiment that downloads data straight from SRA. This uses the full version of the test dataset implemented in #316. Using such real-world, full-size data gives a better test of the customization of the workflows, and this PR also includes various improvements that were made in getting these data running correctly.

This also includes:

  • cleaning up stdout. Some rules were not sending stderr/stdout info to log files and were instead printing directly to stdout
  • several rules are now using multiple threads
  • improvements to error messages and config-checking

@daler daler changed the base branch from v1.7rc to v1.8rc April 3, 2021 21:34
@daler daler merged commit fcceb0f into v1.8rc Apr 4, 2021
@daler daler deleted the complex-rnaseq branch April 4, 2021 23:07
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant