[DO NOT MERGE] : WIP: Dump strategy branch in sync with devel#144

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brtnfld wants to merge 160 commits intolanl:develfrom

brtnfld:dump_strategy

Commits on Dec 30, 2018

Format tweaks.
Dave Nystrom
committed

Commits on Jan 7, 2019

Fix what appears to be a memory error that dates back to the v407 version.
Dave Nystrom
committed

Commits on Jan 11, 2019

Merge branch 'devel' of /home/wdn/repos/git/vpic into devel_wdn
Dave Nystrom
committed

Commits on Jan 31, 2019

Add configurable and documented build scripts for building VPIC on LANL ATS-1 and CTS-1 machines.
Dave Nystrom
committed
Additional updates to documentation.
Dave Nystrom
committed
Update compiler option documentation to make more accurate.
Dave Nystrom
committed
Reorder options a bit.
Dave Nystrom
committed
For the lanl-ats1 script, make sure that the Cray programming environment
Dave Nystrom
committed

Commits on Feb 2, 2019

Merge branch 'devel' of ../vpic_losalamos_devel into devel
Dave Nystrom
committed

Commits on Feb 11, 2019

Merge branch 'devel' of ../vpic_losalamos_devel into devel
Dave Nystrom
committed
Fix issues and errors in use of float literals introduced in a previous commit.
Dave Nystrom
committed
Add CMake support for configuring a VPIC build with the legacy particle sort
Dave Nystrom
committed

Commits on Feb 19, 2019

Separate lanl-ats1 script into two separate scripts, one for Haswell nodes and one for KNL nodes.
Dave Nystrom
committed

Commits on Feb 20, 2019

Reorder build configuration options to something that seems more sensible.
Dave Nystrom
committed

Commits on Feb 28, 2019

Merge branch 'devel' into devel
rfbird
authored
Add more documentation about various available CMake configuration variables.
Dave Nystrom
committed
Merge branch 'devel' of github.com:dnystrom1/vpic into devel
Dave Nystrom
committed

Commits on Mar 4, 2019

Merge branch 'devel' of ../vpic_losalamos_devel into devel
Dave Nystrom
committed
Merge branch 'devel' of /home/wdn/repos/git/vpic into devel_wdn
Dave Nystrom
committed
Merge branch 'devel_wdn' of /home/wdn/repos/git/vpic into devel_wdn
Dave Nystrom
committed

Commits on Mar 11, 2019

Switch all C files to C++ files unless it is explicit that they need to be C files.
Dave Nystrom
committed

Commits on Jul 10, 2019

Format tweaks.
Dave Nystrom
committed
Initial beginning of ARM Neon intrinsics support.
Dave Nystrom
committed

Commits on Jul 15, 2019

Add CMake support for ARM NEON intrinsics.
Dave Nystrom
committed
Add NEON support for v4float binary operators.
Dave Nystrom
committed
Add float32x4_t type to the v4_neon union.
Dave Nystrom
committed
Add ARM NEON intrinsics support for fma and fms.
Dave Nystrom
committed
Remove some tabs. Format tweaks. Add NEON intrinsics support for contructors.
Dave Nystrom
committed
Add NEON intrinsics support for load_4x4_tr and store_4x4_tr.
Dave Nystrom
committed
Add NEON intrinsics support for v4float assignment operators.
Dave Nystrom
committed
Add NEON intrinsics support for rsqrt and rcp functions.
Dave Nystrom
committed
Add NEON intrinsics support for transpose function.
Dave Nystrom
committed
Fix a typo.
Dave Nystrom
committed

Commits on Jul 16, 2019

Add support for benchmarking center_p and uncenter_p.
Dave Nystrom
committed
Change number of iterations for uncenter/center loop.
Dave Nystrom
committed

Commits on Jul 17, 2019

Add NEON intrinsic support for v4float logical operators to v4_neon.h.
Dave Nystrom
committed
Try an implementation of load/store transpose operations using vld4q_f32 and vst4q_f32.
Dave Nystrom
committed

Commits on Jul 18, 2019

Comment out new implementations for load_4x4_tr and store_4x4_tr since they will
Dave Nystrom
committed

Commits on Jul 22, 2019

More work on v4_neon support.
Dave Nystrom
committed
Add another NEON implementation of transpose.
Dave Nystrom
committed

Commits on Jul 23, 2019

Add new NEON implementations for load and store transpose functions.
Dave Nystrom
committed
Try another idea for implementing the transpose function.
Dave Nystrom
committed

Commits on Jul 25, 2019

Add support for using load_4x8_tr and load_4x16_tr for the ARM NEON case.
Dave Nystrom
committed
Add test cases to V4 unit tests.
Dave Nystrom
committed
Fix a declaration error.
Dave Nystrom
committed
Test different memory alignment for V4 NEON implementation.
Dave Nystrom
committed

Commits on Jul 28, 2019

Format tweak.
Dave Nystrom
committed

Commits on Jul 29, 2019

Commits on Aug 5, 2019

Format tweaks and cleanup before merging into other branches.
Dave Nystrom
committed
Fix issue with undefined symbol.
Dave Nystrom
committed
Try a fix to a unit test failure for the Altivec case.
Dave Nystrom
committed
Modify TEST_CASE_load_4x2_tr to see if I can get it to pass on IBM with Altivec.
Dave Nystrom
committed
Merge branch 'devel' of /home/wdn/repos/git/vpic into devel
Dave Nystrom
committed
Merge branch 'devel' of /home/wdn/repos/git/vpic into devel_wdn
Dave Nystrom
committed

Commits on Aug 6, 2019

Remove a test hack.
Dave Nystrom
committed
Merge branch 'devel_wdn' of /home/wdn/repos/git/vpic into devel_wdn
Dave Nystrom
committed
Remove some experimental NEON intrinsic code.
Dave Nystrom
committed
Remove more code that was used for testing ARM NEON intrinsics version.
Dave Nystrom
committed
Remove some dead code.
Dave Nystrom
committed
Do not disable dynamic resizing since it is not disabled in github.
Dave Nystrom
committed

Commits on Oct 10, 2019

Commits on Oct 14, 2019

default init hdf5 dumping structs
rfbird
committed

Commits on Oct 16, 2019

Commits on Oct 22, 2019

tidied up global particle id convert, close to correct now
rfbird
committed

Commits on Oct 29, 2019

first pass where build system does something useful
rfbird
committed

Commits on Oct 30, 2019

First pass where data dumps cbx
rfbird
committed

Commits on Nov 4, 2019

Commits on Nov 5, 2019

add particle dumping via openpmd (close but not passing openpmd file validator becasue of missing timeOffset)
rfbird
committed

Commits on Nov 6, 2019

Commits on Nov 12, 2019

Commits on Nov 13, 2019

remove needless call to copy constructor in unit tests
rfbird
committed

Commits on Nov 14, 2019

change pmd series object to be a stack object
rfbird
committed

Commits on Jan 15, 2020

Commits on Jan 30, 2020

fix vector semantic where reserve was used instead of resize and increase write chunk size to 256MB. also fix bug where pmd particles were not being flushed at proper times
rfbird
committed

Commits on Feb 2, 2020

Commits on Feb 4, 2020

renable hdf5 debug timing prints
rfbird
committed

Commits on Oct 7, 2020

This commit changes the semantics for lost movers, to avoid a segfault
rfbird
committed
tidy up include file
rfbird
committed
Add optional error on lost mover
rfbird
committed
fix typo in cmake
rfbird
committed
Fixed warnings in test_collision deck

Alex Seaton
authored and
rfbird
committed
Fixed warnings in reconnection_test deck

Alex Seaton
authored and
rfbird
committed
Replaced non-standard binary constants in energy_comparison

Alex Seaton
authored and
rfbird
committed
Eliminate warning about potential multi-line comment

Alex Seaton
authored and
rfbird
committed
Fixed minor bug in dump.cc

Alex Seaton
authored and
rfbird
committed
Eliminated util_base.cc warnings and fixed minor bug

Alex Seaton
authored and
rfbird
committed
Removed unused variables in hydro_p_pipeline.cc

Alex Seaton
authored and
rfbird
committed
Removed unused variable in reduce_array_pipeline*.cc

Alex Seaton
authored and
rfbird
committed
Removed unused variables in takizuka_abe_pipeline.cc

Alex Seaton
authored and
rfbird
committed
Eliminated warning regarding vector intrinsic class copy constructors

Alex Seaton
authored and
rfbird
committed
Fixed bug in large angle Coulomb and hard sphere collision models (please check!)

Alex Seaton
authored and
rfbird
committed
Expanded documentation of unit system.

Alexander Seaton
authored and
rfbird
committed
Documentation: Minor corrections to unit documentation

Alexander Seaton
authored and
rfbird
committed
Updated the units documentation to remove inaccuracies but keep the

SVLuedtke-LANL
authored and
rfbird
committed
Another reworking of the unit documentation...

Alex Seaton
authored and
rfbird
committed
Updated compiled PDF

Alex Seaton
authored and
rfbird
committed
document v1.2 release in readme
rfbird
committed

Commits on Oct 21, 2020

Merge branch 'master' into dump_strategy
brtnfld
committed

Commits on Oct 22, 2020

Commits on Oct 23, 2020

updata output to screen
brtnfld
committed

Commits on Oct 27, 2020

fixed freeing memory
brtnfld
committed

Commits on Feb 10, 2021

Commits on Feb 11, 2021

updated with devel, fixed CI comp. errors
brtnfld
committed

Commits on Jun 10, 2021

Commits on Oct 12, 2021

Fixes issue #146 where vectorized hydro_p has an extra momentum update.
SVLuedtke-LANL
committed

Commits on Oct 13, 2021

Merge pull request #147 from lanl/fix_hydro_p_pipelines
SVLuedtke-LANL
authored

Commits on Mar 1, 2022

Fix failed restore test
Bin Dong
committed

Commits on Mar 3, 2022

Minor changes to fix for restart. Bin
Bin Dong
committed

Commits on Apr 25, 2022

Fixed all erros
Bin Dong
committed

Commits on May 17, 2022

add hdf5_fields test and change to python3 in buffered_particle_dump
Bin Dong
committed

Commits on Jul 25, 2022

Add test hdf5_fields_location_restart and also fix an error in main.cc
Bin Dong
committed
Update location
Bin Dong
committed

Commits on Jul 26, 2022

Add hdf5_fields_many_steps
Bin Dong
committed
Add hdf5_fields_many_steps
Bin Dong
committed

Commits on Jul 28, 2022

Add h5py test
Bin Dong
committed
Add h5py test
Bin Dong
committed

Commits on Jul 29, 2022

Commits on Oct 21, 2022

add test for hdf5_hydro not finished yet
Bin Dong
committed
Merge branch 'dump_strategy' of https://github.com/brtnfld/vpic into dump_strategy
Bin Dong
committed

Commits on Oct 27, 2022

fix error: hdf5 dump to capture result of step 0
Bin Dong
committed

Commits on Jan 2, 2023

simple works for hydro test
Bin Dong
committed

Commits on Jan 3, 2023

add correct test for hdf5 hydro
Bin Dong
committed

Commits on Feb 22, 2023

add hdf5.rst
Bin Dong
committed