v0.21.0

• Updated annotate_celltypes() internal code to deal with changes to SingleR output.

v0.20.0

• Added option to include additional references to annotate_celltypes().
• Fixed documentation for velocity analysis.
• Fixed issue with timeout when downloading nichenetr reference data.

v0.19.0

Minor updates to process_seurat() and annotate_celltypes()

v0.18.0

Fixed but in merge_atac() where bed fields were not properly filtered by size

v0.16.0

Added the option to specify species when running kill_cc() and also to not generate a plot when running it.

v0.15.0 Velocity analysis

Added in code to do velocity analysis

v0.14.0 moving raw data autoprocessing to a different package

Update version to 0.14.0

v0.13.0

Added annotate_celltypes() function

v0.12.0

Added run_fdl() function to make a force directed layout reduction in a Seurat object

v0.10.1

Fixed an issue where filtering based on species_pattern could remove all the genes or peaks in a dataset and result in a rather uninformative error. This has been updated so an informative error is thrown if this happens.