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functionality for Parse&10x FLEX and updated cellbender #57

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functionality for Parse&10x FLEX and updated cellbender #57

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a04d77d
Added functionality for Parse and 10x FLEX and updated cellbender fun…
Mar 19, 2025
8a63533
Fixes_nr_1
Jul 11, 2025
30af8d0
Fixes nr 2: introduce technology flag
Sep 23, 2025
6c75793
Merge branch 'main' into feature/parse_compatibility
rrydbirk Oct 6, 2025
317698a
read in of duplicated samples fixed, new function plotRawDepth
Nov 14, 2025
8118ccb
introduced depth.cutoff.upper, plotBarcodeRankPlot, reformulated some…
Jan 26, 2026
30814f3
changed prepareCellbender function to not plot Barcode-Rank-plots any…
Mar 11, 2026
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14 changes: 13 additions & 1 deletion .gitignore
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Expand Up @@ -14,8 +14,10 @@
# RStudio files
.Rproj.user/
# produced vignettes
vignettes
vignettes/*.html
vignettes/*.pdf
vignettes/*.Rmd
# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth
# knitr and R markdown default cache directories
Expand All @@ -27,9 +29,19 @@ vignettes/*.pdf
# R Environment Variables
.Renviron
# Project files
.Rproj
*.Rproj
cran-comments.md
.Rbuildignore
CRMetrics.Rproj
CRAN-SUBMISSION
.github/
# test data
control_6
control_7
metadata.csv
metadata_test.csv
metadata_test2.csv
metadata_test_multiome.csv
metadata_parse.csv
# summary of updates for users
CRMetrics_updates_for_users.Rmd
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