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  1. MSc_Dissertation_Kvass MSc_Dissertation_Kvass Public

    Integrated 16S rRNA and shotgun metagenomic analysis of sourdough-based kvass fermentation. Explores how dietary fibre addition shapes microbial composition and metabolic potential using QIIME2, Me…

    Shell

  2. RNAseq_Isl1_Knockout RNAseq_Isl1_Knockout Public

    RNA-seq analysis of Isl1 knockout vs wild-type mouse allantois (GSE247182) using DESeq2 and fgsea for pathway enrichment.

    R

  3. BPSM_Scripting_Tools BPSM_Scripting_Tools Public

    Practice scripts and cheat sheets for BPSM coursework — Linux, Bash, AWK, Python, Git, and HPC (Eddie) exercises for MSc Bioinformatics at the University of Edinburgh.

    Shell

  4. BioDB_SQL_API_Project BioDB_SQL_API_Project Public

    Integration of Ensembl, UniProt, KEGG, and miRBase using R, MySQL, and REST APIs. Demonstrates bioinformatics database design, data retrieval, and relational integration through R–SQL pipelines.

    R

  5. elaniti-nextflow-metagenomics elaniti-nextflow-metagenomics Public

    Modular Nextflow DSL2 metagenomics pipeline with Docker and Slurm support

    Nextflow