Add output folder option for getMLST.py#86
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- Added the requirement to add an output folder, for MLST database storage, so that files don't just get stored in home directory - Added the 'delimiter' output file to make it easier for me to use srst2 in a bash script I was putting together NOTE: I have zero experience with python, so there may be errors, but it's worked in my limited testing to date
getmlst.py add option for output folder and produce delimiter file
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Hi there,
I added a bit of code to the getmlst.py script to add an option for an output folder. It should take all the downloaded files, and the log file, and put them in a folder, as well as make a text file with the delimiter (which I found useful when running bash loops, as I could use grep to pull out the appropriate delimiter). Honestly I have no experience with python, so this might need a look over, worked out the code just by reading what was already in the script.
Hope it's useful, and thanks for all the programs your group produces