Update utilities.R stat_pvalue_manual Positions on the plot#113
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ZWael wants to merge 1 commit intokassambara:masterfrom
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Update utilities.R stat_pvalue_manual Positions on the plot#113ZWael wants to merge 1 commit intokassambara:masterfrom
ZWael wants to merge 1 commit intokassambara:masterfrom
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proposition to resolve the conflict between ggpubr plot and rstatix stat table x_y positions
the Anomalie (reproducible example)
library(ggpubr)
library(rstatix)
data2=data.frame(id =1:15 ,group=c(rep("C",5),rep("B",5),rep("A",5)),score=c(rnorm(5,0),rnorm(5,0.5),rnorm(5,2)))
head(data2)
res.kruskal = kruskal_test(data2, formula = score~group)
pwc = dunn_test(data2, formula = score~group, p.adjust.method = "BH")
pwc = pwc %>% add_xy_position(x = "group")
p <- ggboxplot(data2, x = "group", y = "score",
color = "group", palette = "jco",
add = "jitter",
title=paste("boxplot"))
y = stat_pvalue_manual(pwc, hide.ns = TRUE)
lab= labs(
subtitle = get_test_label(res.kruskal, detailed = FALSE),
caption = get_pwc_label(pwc)
)
print(p+y+lab)
pwc
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proposition to resolve the conflict between ggpubr plot and rstatix stat table x_y positions
the Anomalie (reproducible example)
library(ggpubr)
library(rstatix)
data2=data.frame(id =1:15 ,group=c(rep("C",5),rep("B",5),rep("A",5)),score=c(rnorm(5,0),rnorm(5,0.5),rnorm(5,2)))
head(data2)
res.kruskal = kruskal_test(data2, formula = score ~ group)
pwc = dunn_test(data2, formula = score ~ group, p.adjust.method = "BH")
pwc = pwc %>% add_xy_position(x = "group")
p <- ggboxplot(data2, x = "group", y = "score",
color = "group", palette = "jco",
add = "jitter",
title=paste("boxplot"))
y = stat_pvalue_manual(pwc, hide.ns = TRUE)
lab= labs(
subtitle = get_test_label(res.kruskal, detailed = FALSE),
caption = get_pwc_label(pwc)
)
print(p+y+lab)
pwc