R package methylDeConv: A Computational Deconvolution Pipeline for Methylation data
In R session:
devtools::install_github("jysonganan/methylDeConv")
Check the Google Colab Demos 👉 here.
The details, parameter setting and output format for each function are included in the R package manual 👉 here
EpiDISH https://www.bioconductor.org/packages/release/bioc/html/EpiDISH.html
MethylCIBERSORT https://zenodo.org/record/1284582#.YMZlUpNKjBI
MethylResolver https://github.com/darneson/MethylResolver
xCell https://github.com/dviraran/xCell
minfi https://github.com/hansenlab/minfi/blob/master/R/estimateCellCounts.R