Protocols and materials for Cetline

This is the repository where I prepare protocols for Cetline's project. All source files are in src, and all protocols can be compiled in protocols_pdf by running compile_all.sh (You need pandoc, Rscript, and rmarkdown).

Folders

• images: contains images used in protocols
• literature: contains papers in the reading list of plan.pdf in PDF.
• protocols_docx: contains docx files automatically generated by pandoc
• protocols_pdf: contains all protocols in PDF
• scripts: contains custom scripts used in analyses
• src: contains markdown and Rmd files for all protocols
• test_data: contains test data used in protocols

Files

• compile_all.sh: a shell script to compile all protocols from src/ to protocols_pdf/
• plan.pdf: the general guide for Cetline made from src/plan.md.
• README.md: this file