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New user exon_stitching.sh

Status: Open.

#19 In juliema/exon_stitching;

· Ofsm opened on Jul 10, 2020

some taxa are printed out twice, one is always blank

Status: Open.

#17 In juliema/exon_stitching;

· juliema opened on Aug 24, 2018

check NNN + Stop codon issue

Status: Open.

#16 In juliema/exon_stitching;

· juliema opened on Nov 13, 2017

possibly long sequenes.. check

Status: Open.

#15 In juliema/exon_stitching;

· juliema opened on Nov 13, 2017

typing the header over and over bug

Status: Open.

#14 In juliema/exon_stitching;

· juliema opened on Nov 13, 2017

test output if no exon is found

Status: Open.

#13 In juliema/exon_stitching;

· juliema opened on Nov 11, 2017

add in optional output directory path and name

Status: Open.

#12 In juliema/exon_stitching;

· juliema opened on Nov 3, 2017

add script to take all contigs from the highest iteration number from aTRAM output

Status: Open.

#11 In juliema/exon_stitching;

· juliema opened on Nov 3, 2017

add in changing the genetic code as an option

enhancement

Status: Open.

#10 In juliema/exon_stitching;

· juliema opened on Nov 3, 2017

remove overlapping pieces and stitch the overlapped contigs together

enhancement

Status: Open.

#9 In juliema/exon_stitching;

· juliema opened on Nov 3, 2017

make overlap and optional parameter with zero as the default

Status: Open.

#8 In juliema/exon_stitching;

· juliema opened on Nov 3, 2017

test suite for selective stitching

Status: Open.

#6 In juliema/exon_stitching;

· juliema opened on Nov 2, 2017