polymer_model

Hip-hop model reproduction

1. Script for MD running 18_model / 23_model

2. Dump analysis - Calculation for Distance matrix and Contact matrix

   18_model: i. prob value calculation ii. 'interac-attempt' - count version iii. Calculation test on jax + GPU

   23_model: i. repeat/segment extraction ii. prob value calculation

3. Plotting script Coloured version (for alignment with hip-hop authors) / White-red version (for comparing with HiC map)