Search results

[Documentation] - Add description on what is meant by "scaled" with regards to number_of_reads and tpm

Status: Open.

#19 In jolespin/leviathan;

· jolespin opened on Dec 4, 2025

[Feature Request] - leviathan-profile-taxonomy.py should concat taxonomic and sequence abundance in same file

Status: Open.

#13 In jolespin/leviathan;

· jolespin opened on Jul 1, 2025

[Feature Request] - Clean up intermediate files in Salmon

Status: Open.

#12 In jolespin/leviathan;

· jolespin opened on Jun 28, 2025

[Feature Request] - Add build-pangenomes executable

Status: Open.

#11 In jolespin/leviathan;

· jolespin opened on Jun 26, 2025

[Feature Request] - Add interactive visualization

Status: Open.

#9 In jolespin/leviathan;

· jolespin opened on May 24, 2025

[Feature Request] - Add "Complete" message in logs

Status: Open.

#8 In jolespin/leviathan;

· jolespin opened on May 20, 2025

[Feature Request] - Use loguru instead of pyexeggutor for logging

Status: Open.

#6 In jolespin/leviathan;

· jolespin opened on May 5, 2025

[Feature Request] - Add automatic alpha diversity calculations to anndata object

Status: Open.

#5 In jolespin/leviathan;

· jolespin opened on Apr 1, 2025

[Feature Request] - Add visualization

Status: Open.

#4 In jolespin/leviathan;

· jolespin opened on Apr 1, 2025

[Bug] If genome clusters are provided and a genome is missing all features, then it is excluded from the genome_to_data.pkl.gz

Status: Open.

#1 In jolespin/leviathan;

· jolespin opened on Jan 19, 2025