Skip to content

joelaforet/polyzymd_builder

polyzymd_builder

GitHub Actions Build Status codecov

This repository is currently under development. To run the tutorial .ipynb notebooks, you first need to build the environment from the provided environment.yml file. After downloading this repository, create the environment with:

mamba env create -f environment.yml

and activate it with:

mamba activate polyzymd-env

Important Notes

Building Polymers from Monomers

  • Monomers must be constructed in a way that is compliant with the reaction chemistry you wish to perform.
  • For example, Atom-Transfer Radical Polymerization (ATRP) first requires activation of monomers via halogenating them. abstract
  • To perform this reaction, you must provide a halogenated monomer structure, in the example case a chlorinated one. abstract

Copyright

Copyright (c) 2025, Joe Laforet Jr.

Acknowledgements

Project based on the Computational Molecular Science Python Cookiecutter version 1.11.

About

Repo for scripts that are useful for setting up polymer-protein systems for use with MD simulation.

Resources

License

Code of conduct

Contributing

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published