This repository contains tasks that should be completed within the scope of Bachelor project. The project will be divided into several phases, each with a specific set of tasks. You should create your branch and push your solutions to given tasks to a folder solutions in your branch.
First phase focuses on getting familiar with basic concepts and data formats used in bioinformatics. Students should complete a set of several smaller tasks as part of this phase. The tasks include:
- Parsing and analyzing FASTA and FASTQ files - Task related to this part is explained in subdirectory 1-FASTA-files
- Mapping a set of reads to a reference - Taks related to this part is explained in subdirectory 1-mapping
- Parsing and analyzing FAST5 files - Task related to this part is explained in subdirectory 1-FAST5-files
The tasks are expected to be executed in linux environment, probably using remote servers. Files that should be of help for this are:
- Linux.txt
- Servers.txt