scRNA-seq Analysis

Work Flow

There are seven steps to analysis single cell RNA-seq from 10X data.

Name		Name	Last commit message	Last commit date
Latest commit History 14 Commits
pics		pics
1520310989-1147-QU6Bazlv0zKXhKFVniasIUZ15KQw.jpg		1520310989-1147-QU6Bazlv0zKXhKFVniasIUZ15KQw.jpg
LICENSE		LICENSE
README.md		README.md
enrichplot.r		enrichplot.r
plot_loom.r		plot_loom.r
scRNAseq_analysis.ipynb		scRNAseq_analysis.ipynb
simple_analysis.py		simple_analysis.py
step1-basic.R		step1-basic.R
step2-merge-clusters.R		step2-merge-clusters.R
step3-sub-clusters.R		step3-sub-clusters.R
step4-clustree.R		step4-clustree.R
step5-downsamples.R		step5-downsamples.R
step6-dotplot.R		step6-dotplot.R
step7-deg-by-anything.R		step7-deg-by-anything.R