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…n FMAP_all FMAP_download FMAP_mapping and FMAP_quantification to allow alternate database path if default is not writable. Added -no-download option to FMAP_all so that on multiple runs database does not get downloaded multiple times.
Made scripts executable (ln 1) Added -d option to _all _download _mapping and _quantification to allow for non-default database directory Added -no-download option to _download so that database does not have to be re-downloaded each time script is run
…n FMAP_all, FMAP_download, FMAP_mapping, FMAP_quantification, FMAP_operon and FMAP_pathway to allow alternate database path if default is not writable. Added -no-download option to FMAP_all so that on multiple runs database does not get downloaded multiple times. Changed option from t to c in FMAP_all generated command for FMAP_comparison
Update ln 1 to make executable Add -d option to scripts to facilitate alternate database location Change option t to c in FMAP_all for generated FMAP_comparison command
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Updated scripts to be executable
Added -d option to allow choice of database location (in some cases location of scripts will not be writable e.g. on cluster)
Added -no-download option to FMAP_all.pl so that database will not be re-downloaded if running multiple times.